Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq154 159 8e-34 seq102 125 2e-23 seq123 96.9 8e-15 >seq154 Length=71981 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || |||||||| || || |||||||| || ||||| ||||| | | ||| | || Sbjct 41461 TCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACC 41402 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||||||| |||||||||||||| | || || ||||| || |||| |||||||| Sbjct 41401 ATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTT 41342 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || ||||| |||||||| ||||| ||| || ||||| || || Sbjct 41341 GTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTAT 41282 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || ||||| | ||||| Sbjct 41281 GGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||||| ||| || ||||||||||| || || || ||||| || ||||| | ||| | Sbjct 41239 ACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGT 41180 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || || |||||||| ||||| || || ||||| || || || ||||| ||||||| | Sbjct 41179 TCGG-CCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATAC 41121 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| |||||||| || || || || |||||||| || || |||||||||| Sbjct 41120 CCTCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGA 41061 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| ||||| || || | ||||| ||||| | |||||| Sbjct 41060 GAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 147 bits (162), Expect = 5e-30 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||| || || || ||||| || ||||| || || | ||||| | | || || Sbjct 41001 AGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGTC 40943 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| |||||||| || ||||| || || ||||| ||||||||||||| || |||||||| Sbjct 40942 TTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTC 40883 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| || || || ||||| |||||| | ||| ||||| || ||||| || Sbjct 40882 TTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGT 40823 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT-ATGGT 211122 ||| || || |||||||| || || | ||||||||| ||||| Sbjct 40822 CTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTGATGGT 40781 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||| || || ||| || || ||||| ||||| | ||| || Sbjct 41694 CGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTA 41635 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| ||||| || || ||||| || ||||| || || || |||| || Sbjct 41634 CGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCC 41575 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || || || ||||| ||||||||||| |||||||| | Sbjct 41574 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAG 41515 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| ||||| || || | ||||| Sbjct 41514 GTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 >seq102 Length=189570 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || | || || | ||||||||||||||||| || ||||| || Sbjct 7820 TTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAATC 7761 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||| ||||| || || | || |||||| |||||||||| || || || ||| Sbjct 7760 AATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGTCG 7701 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| || |||||||| || Sbjct 7700 ATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAA 7642 >seq123 Length=109856 Score = 96.9 bits (106), Expect = 8e-15 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 || |||||||| || || || |||||| ||| || ||||| ||||| || || Sbjct 48212 CCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTT 48153 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||||| || ||| | | ||| || ||| | || ||| || || |||| | Sbjct 48152 CCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGTGCCTTGATTGTCTGT 48093 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | || ||||| ||||| ||||| | | | || ||||||| ||| || ||| Sbjct 48092 CGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAG 48033 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 ||| | ||| ||||| || ||||||||||||||| |||| | |||| || || || Sbjct 48032 TCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACC 47973 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGA 178355 || |||||||| || || | ||||||| Sbjct 47972 CGCTTCATGAACAGATCTGGAGTCCAGA 47945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148777195205