Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq154 159 8e-34
seq102 125 2e-23
seq123 96.9 8e-15
>seq154
Length=71981
Score = 159 bits (176), Expect = 8e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958
||| || |||||||| || || |||||||| || ||||| ||||| | | ||| | ||
Sbjct 41461 TCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACC 41402
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||| |||||||| |||||||||||||| | || || ||||| || |||| ||||||||
Sbjct 41401 ATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTT 41342
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| ||||| || || ||||| |||||||| ||||| ||| || ||||| || ||
Sbjct 41341 GTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTAT 41282
Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || ||||| | |||||
Sbjct 41281 GGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 156 bits (172), Expect = 1e-32
Identities = 170/223 (76%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||||| ||| || ||||||||||| || || || ||||| || ||||| | ||| |
Sbjct 41239 ACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGT 41180
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
|| || |||||||| ||||| || || ||||| || || || ||||| ||||||| |
Sbjct 41179 TCGG-CCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATAC 41121
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| |||||||| || || || || |||||||| || || ||||||||||
Sbjct 41120 CCTCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGA 41061
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||| ||||| || || | ||||| ||||| | ||||||
Sbjct 41060 GAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Score = 147 bits (162), Expect = 5e-30
Identities = 168/222 (76%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|| || | ||| || || || ||||| || ||||| || || | ||||| | | || ||
Sbjct 41001 AGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGTC 40943
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||| |||||||| || ||||| || || ||||| ||||||||||||| || ||||||||
Sbjct 40942 TTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTC 40883
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
|| ||||| || || || ||||| |||||| | ||| ||||| || ||||| ||
Sbjct 40882 TTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGT 40823
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT-ATGGT 211122
||| || || |||||||| || || | ||||||||| |||||
Sbjct 40822 CTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTGATGGT 40781
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| || || | ||| || || ||| || || ||||| ||||| | ||| ||
Sbjct 41694 CGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTA 41635
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || |||| ||||| || || ||||| || ||||| || || || |||| ||
Sbjct 41634 CGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCC 41575
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || || || ||||| ||||||||||| |||||||| |
Sbjct 41574 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAG 41515
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || ||||| ||||| || || | |||||
Sbjct 41514 GTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
>seq102
Length=189570
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||| ||||| || || | || || | ||||||||||||||||| || ||||| ||
Sbjct 7820 TTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAATC 7761
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||| ||||| || || | || |||||| |||||||||| || || || |||
Sbjct 7760 AATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGTCG 7701
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || ||||| ||||| ||||| || |||||||| ||
Sbjct 7700 ATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAA 7642
>seq123
Length=109856
Score = 96.9 bits (106), Expect = 8e-15
Identities = 182/268 (68%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147
|| |||||||| || || || |||||| ||| || ||||| ||||| || ||
Sbjct 48212 CCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTT 48153
Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207
|| ||||| || ||| | | ||| || ||| | || ||| || || |||| |
Sbjct 48152 CCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGTGCCTTGATTGTCTGT 48093
Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267
| || ||||| ||||| ||||| | | | || ||||||| ||| || |||
Sbjct 48092 CGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAG 48033
Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327
||| | ||| ||||| || ||||||||||||||| |||| | |||| || || ||
Sbjct 48032 TCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACC 47973
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGA 178355
|| |||||||| || || | |||||||
Sbjct 47972 CGCTTCATGAACAGATCTGGAGTCCAGA 47945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159148777195205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |