Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq154 116 3e-21 >seq154 Length=71981 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| || ||||| || || |||||||| || || | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| | ||||| |||||| | || ||||| || Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAA-TCCAAGACAAGGAAGGTATTCCACCAGACCA 41364 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || |||||||| ||||| || | || || || |||||||| Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || |||||||| ||| | || | || | || |||||||| || Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGG 41472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || || || ||||||||||| ||||| || | Sbjct 41018 ATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTCC 41077 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | |||| | || || || ||| | || || || || Sbjct 41078 GATACCATCGACAATGTCAAGAGCAAAA-TCCAGGATAAGGAGGGTATTCCTCCCGACCA 41136 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || ||||||||||||| || ||||| | |||||||| Sbjct 41137 GCAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACAA 41196 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || || || || || | || ||||| || Sbjct 41197 TATCCAGAAGGAATCGACTCTTCACCTAGTTCTA 41230 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || || || || || || || ||||| || || || || ||| Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || ||| ||||| || || | || || || Sbjct 40847 AGTGACACGATCGACAATGTCAAGA-GCAAGATTCAAGACAAGGAGGGCATTCCTCCTGA 40905 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | || || || || || || || ||||||| ||||| || |||| || Sbjct 40906 CCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTA 40965 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| || || Sbjct 40966 CAACATTCAGAAAGAATCAAC 40986 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/199 (69%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || || || || || | || ||||| | | Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | |||| || || ||||| || ||| | ||||| ||||| Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || |||||||| || ||| |||| |||| || ||| | ||||||||| Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653 Query 23791 ATACAAAA--AGAGTCCAC 23807 || || || ||||| ||| Sbjct 41654 ATTCAGAAGGAGAGTACAC 41672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008706070236