Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq154 116 3e-21
>seq154
Length=71981
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || ||||| ||||| || ||||| || || |||||||| || || |
Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || || |||| | |||| | ||||| |||||| | || ||||| ||
Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAA-TCCAAGACAAGGAAGGTATTCCACCAGACCA 41364
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || || |||||||| ||||| || | || || || ||||||||
Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || |||||||| ||| | || | || | || |||||||| ||
Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGG 41472
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || | || || || || ||||||||||| ||||| || |
Sbjct 41018 ATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTCC 41077
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | |||| | || || || ||| | || || || ||
Sbjct 41078 GATACCATCGACAATGTCAAGAGCAAAA-TCCAGGATAAGGAGGGTATTCCTCCCGACCA 41136
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| || || ||||||||||||| || ||||| | ||||||||
Sbjct 41137 GCAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACAA 41196
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| || || || || || | || ||||| ||
Sbjct 41197 TATCCAGAAGGAATCGACTCTTCACCTAGTTCTA 41230
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| || || || || || || || ||||| || || || || |||
Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || ||| ||||| || || | || || ||
Sbjct 40847 AGTGACACGATCGACAATGTCAAGA-GCAAGATTCAAGACAAGGAGGGCATTCCTCCTGA 40905
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| || ||| | || || || || || || || ||||||| ||||| || |||| ||
Sbjct 40906 CCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTA 40965
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || ||||| || ||
Sbjct 40966 CAACATTCAGAAAGAATCAAC 40986
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/199 (69%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || ||||| || || || || || | || ||||| | |
Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | |||| || || ||||| || ||| | ||||| |||||
Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || | || |||||||| || ||| |||| |||| || ||| | |||||||||
Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653
Query 23791 ATACAAAA--AGAGTCCAC 23807
|| || || ||||| |||
Sbjct 41654 ATTCAGAAGGAGAGTACAC 41672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008706070236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |