Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq85 190 2e-43 >seq85 Length=245923 Score = 190 bits (210), Expect = 2e-43 Identities = 559/853 (66%), Gaps = 19/853 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 84142 ACACCAGCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGA 84201 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT---TTCACACTTT 4364 || || || |||||||| ||||||||||| || | ||||| | || | || | Sbjct 84202 GAGATGTTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCC--- 84258 Query 4365 AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTT 4423 | | ||| | || ||||| || || || || || ||||| ||||||| |||| |||| Sbjct 84259 ATACTTACCAACAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCG-AGTT 84317 Query 4424 AATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || || | || || || ||||| | || | || ||||| || || ||||| Sbjct 84318 CATGCCCAGTAGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGC 84377 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCA-AACA 4542 || ||| || | | || || || || || | |||| | | | || Sbjct 84378 CTCGACGATGATGGCCTGGATAAGTTCCTTTGA-GGGGCGGTGGTTAAGGTGCGAGAGCA 84436 Query 4543 ATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACG 4602 | |||||||| || |||| || ||||| | | || |||||||| || || | Sbjct 84437 GCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGG 84496 Query 4603 TTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAA 4662 | | |||||||| | ||||| ||| || ||||| || || | ||| || || || || | Sbjct 84497 TAAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGA 84556 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 |||| || ||||| || |||||||| || || | || | || | | || | Sbjct 84557 AGAAGATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTCGAT 84616 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 || |||||| | ||||| | |||||| || ||| ||| |||||||| | || | Sbjct 84617 CTGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGG 84676 Query 4783 CGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 ||| || | ||| |||| | ||| |||| ||| || ||||| || || || Sbjct 84677 CGTCGAAGAGGTATTGTCTTTGCT---TTGGCTCTTTAATGTATGTGTCAATGAGAAGTG 84733 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 |||||||| || || ||||| || ||||| || || |||||||| | |||| Sbjct 84734 AGTACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTT 84793 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | ||||| |||||| | || | || || | ||| ||||| || || ||||| Sbjct 84794 CGGGGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCG 84853 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT-- 5017 ||| || || || || | || || || | ||||| |||||||| || || || Sbjct 84854 AGGCGGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTTGT 84913 Query 5018 -TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 | ||||| | | | |||||| | | || |||||||| | ||||| || || |||| Sbjct 84914 GGTGCCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTT 84973 Query 5077 CCGCTTTTTTGTA 5089 | ||||| ||||| Sbjct 84974 CGGCTTTCTTGTA 84986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048470587261