Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq123 224 1e-53 >seq123 Length=109856 Score = 224 bits (248), Expect = 1e-53 Identities = 1187/1875 (63%), Gaps = 29/1875 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || || ||||| | ||| || | | || || ||||||||||| ||||| || ||| Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| |||| || ||| ||||| || | ||| | || || | | Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| |||| |||||| ||||| ||||| || |||| |||||| ||||| | || Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 || || | |||| || ||||| | ||| ||| | | | |||||| || ||||| | Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966 Query 77022 TTTG-TA--TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 |||| || || ||||| ||||| || || | || ||| | ||||| || | || | Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 |||| || | | || | || || ||||| || | |||||||| || Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | || || | ||| | ||| || || |||||||| || | ||||||| || ||| Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 || || || | ||||| || || ||||| ||||| || | | | ||||| | |||| Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726 Query 77259 TG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 | || | || || |||| | | ||| |||||||| |||| ||| | | | Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| || ||||| ||||| || | | | || || | ||| ||||| || || Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607 Query 77378 TCC---TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTC 77434 || ||| ||| || || ||||| ||| || ||| ||| || || || || Sbjct 48606 ACCAAGTTCC--TTC-GCAAGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550 Query 77435 GAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG-AA 77493 ||| || | | ||||| | | |||||| | ||| ||||| | | ||| | || Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491 Query 77494 TAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAA 77553 || ||||| || | || ||||| |||| |||||| |||| ||||| ||| Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCT 48431 Query 77554 TTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAA 77613 || | ||||| || | || || || || || || || || || || || || || | Sbjct 48430 TTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCA 48371 Query 77614 CTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTAT------AAC-A 77666 || | | || || | ||| ||| ||| || || || | ||| | Sbjct 48370 TGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACGA 48311 Query 77667 AACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATAT 77726 || ||| |||||| | ||| || | ||| || || || ||||| | || | || || Sbjct 48310 AAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTAC 48252 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 | || || || || || | || | ||||| ||||||| || | || || || Sbjct 48251 TCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTT 48192 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 ||| | ||||| | |||||| || || || || || | || || ||| |||| | || Sbjct 48191 TTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCC 48132 Query 77847 ATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTC 77905 | || | | ||| | | || | || || || | | | ||| | || | || Sbjct 48131 AAGATGGCATACCACAACTTCTGT-GCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTC 48073 Query 77906 ATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 ||| | | | | |||| || || || || || | ||| || || || | Sbjct 48072 ATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCT 48015 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 || || ||||| | | | |||||| || | || || ||| || ||||| || ||||| Sbjct 48014 TCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCT 47955 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083 || |||| ||||| ||| | ||| || | | | |||||| ||||| ||||| Sbjct 47954 GGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTC 47895 Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143 || | || |||| | | ||| | ||||| || || || || | || | | Sbjct 47894 CGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCA 47835 Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 ||||||| || || || ||||| || | |||| || || || | | | |||| | | Sbjct 47834 CCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGC 47775 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263 || || | || ||||| ||||| || ||||| || | ||||| ||| | || ||| Sbjct 47774 ATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGA 47715 Query 78264 ATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323 || || | | | || || || || || |||| || || | ||||| || Sbjct 47714 ATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTT 47655 Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383 | ||||||||||| ||||| || ||| ||| |||||| | | ||||| ||| Sbjct 47654 AGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGAC 47595 Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443 |||||| || || |||||||| || | || || || || || || ||| || Sbjct 47594 ATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTC 47535 Query 78444 TCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACC 78503 | || | ||||||||||| ||||| | || || || | |||||| || || Sbjct 47534 TGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACA 47475 Query 78504 GCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAG 78563 | || ||||||| ||| ||||| |||||||| | ||| || | || || | ||| Sbjct 47474 GACACGCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTT-GTCATATTTGAGAAG 47416 Query 78564 -TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAAT 78622 |||||| |||||| || || || |||||||||||||| ||| |||| ||||| | Sbjct 47415 ATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATAC 47356 Query 78623 AATAACAGAATTTAG 78637 ||| |||| || || Sbjct 47355 AATGGCAGAGTTGAG 47341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666915710880