Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq123 224 1e-53
>seq123
Length=109856
Score = 224 bits (248), Expect = 1e-53
Identities = 1187/1875 (63%), Gaps = 29/1875 (2%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| || || ||||| | ||| || | | || || ||||||||||| ||||| || |||
Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|||| |||| || ||| ||||| || | ||| | || || | |
Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
||||| |||| |||||| ||||| ||||| || |||| |||||| ||||| | ||
Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
|| || | |||| || ||||| | ||| ||| | | | |||||| || ||||| |
Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966
Query 77022 TTTG-TA--TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078
|||| || || ||||| ||||| || || | || ||| | ||||| || | || |
Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906
Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138
|||| || | | || | || || ||||| || | |||||||| ||
Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846
Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
| || || | ||| | ||| || || |||||||| || | ||||||| || |||
Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
|| || || | ||||| || || ||||| ||||| || | | | ||||| | ||||
Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726
Query 77259 TG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317
| || | || || |||| | | ||| |||||||| |||| ||| | | |
Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667
Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377
||| || ||||| ||||| || | | | || || | ||| ||||| || ||
Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607
Query 77378 TCC---TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTC 77434
|| ||| ||| || || ||||| ||| || ||| ||| || || || ||
Sbjct 48606 ACCAAGTTCC--TTC-GCAAGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550
Query 77435 GAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG-AA 77493
||| || | | ||||| | | |||||| | ||| ||||| | | ||| | ||
Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491
Query 77494 TAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAA 77553
|| ||||| || | || ||||| |||| |||||| |||| ||||| |||
Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCT 48431
Query 77554 TTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAA 77613
|| | ||||| || | || || || || || || || || || || || || || |
Sbjct 48430 TTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCA 48371
Query 77614 CTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTAT------AAC-A 77666
|| | | || || | ||| ||| ||| || || || | ||| |
Sbjct 48370 TGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACGA 48311
Query 77667 AACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATAT 77726
|| ||| |||||| | ||| || | ||| || || || ||||| | || | || ||
Sbjct 48310 AAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTAC 48252
Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786
| || || || || || | || | ||||| ||||||| || | || || ||
Sbjct 48251 TCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTT 48192
Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846
||| | ||||| | |||||| || || || || || | || || ||| |||| | ||
Sbjct 48191 TTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCC 48132
Query 77847 ATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTC 77905
| || | | ||| | | || | || || || | | | ||| | || | ||
Sbjct 48131 AAGATGGCATACCACAACTTCTGT-GCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTC 48073
Query 77906 ATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963
||| | | | | |||| || || || || || | ||| || || || |
Sbjct 48072 ATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCT 48015
Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023
|| || ||||| | | | |||||| || | || || ||| || ||||| || |||||
Sbjct 48014 TCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCT 47955
Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT 78083
|| |||| ||||| ||| | ||| || | | | |||||| ||||| |||||
Sbjct 47954 GGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTC 47895
Query 78084 TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACT 78143
|| | || |||| | | ||| | ||||| || || || || | || | |
Sbjct 47894 CGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCA 47835
Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203
||||||| || || || ||||| || | |||| || || || | | | |||| | |
Sbjct 47834 CCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGC 47775
Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263
|| || | || ||||| ||||| || ||||| || | ||||| ||| | || |||
Sbjct 47774 ATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGA 47715
Query 78264 ATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323
|| || | | | || || || || || |||| || || | ||||| ||
Sbjct 47714 ATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTT 47655
Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383
| ||||||||||| ||||| || ||| ||| |||||| | | ||||| |||
Sbjct 47654 AGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGAC 47595
Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443
|||||| || || |||||||| || | || || || || || || ||| ||
Sbjct 47594 ATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTC 47535
Query 78444 TCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACC 78503
| || | ||||||||||| ||||| | || || || | |||||| || ||
Sbjct 47534 TGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACA 47475
Query 78504 GCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAG 78563
| || ||||||| ||| ||||| |||||||| | ||| || | || || | |||
Sbjct 47474 GACACGCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTT-GTCATATTTGAGAAG 47416
Query 78564 -TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAAT 78622
|||||| |||||| || || || |||||||||||||| ||| |||| ||||| |
Sbjct 47415 ATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATAC 47356
Query 78623 AATAACAGAATTTAG 78637
||| |||| || ||
Sbjct 47355 AATGGCAGAGTTGAG 47341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694666915710880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |