Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq123 219 6e-52 >seq123 Length=109856 Score = 219 bits (242), Expect = 6e-52 Identities = 1316/2077 (63%), Gaps = 48/2077 (2%) Strand=Plus/Minus Query 75365 TTCTTATCCAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||||| |||| || || || | || || | | || || ||||||||||| Sbjct 49218 TTCTTGGTCAACGGTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACAT 49159 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 ||||| || ||||||| |||| || ||| ||||| || | ||| | Sbjct 49158 GCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGT 49099 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || | |||||| |||| |||||| ||||| ||||| || |||| |||||| Sbjct 49098 TGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGC 49039 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | || || || | |||| || ||||| | ||| ||| | | | |||||| Sbjct 49038 GGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGAT 48979 Query 75604 ATCATCTGGAAGATTTG-TA--TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 || ||||| |||| || || ||||| || ||||| || | || ||| | ||||| Sbjct 48978 GTCGGTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTT 48919 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | || ||||| || | | || | || || ||||| || | Sbjct 48918 CATGTTGTCCGACCACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGAC 48859 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 |||||||| || | || || | || | ||| || || |||||||| || | | Sbjct 48858 CTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCA 48799 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 |||||| || ||||| || || | || || || |||||||| ||||| || | | | Sbjct 48798 TTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGA 48739 Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 ||||| | ||||| || | || || |||| | | ||| |||||||| |||| Sbjct 48738 ATTTCGAACACCATACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTG 48680 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATG----ATCCA 75955 |||| | | ||||||| ||||| ||||| || ||| || | ||| | || Sbjct 48679 TTGGTGTCAGACCCCAGAGGTCGTACTGTAGCTGACC-TTG--AGAA-ATGGGCGAGCCC 48624 Query 75956 TTATATGTTTCGTAAGTCCC--GTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 | ||| |||||||| | || || | || || || || || || | || Sbjct 48623 TCATAGGTTTCGTATGGACCAAGTTCCTTC--GCAAGGTCACATGAAGCTGTCAGAGCTG 48566 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 ||| || || || ||||| || | | || || | | ||||| || ||| || | Sbjct 48565 CGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACG 48506 Query 76074 GATAATGTAAAAG-AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTA 76132 | | | ||| | || || ||||| || || || ||||| |||| |||||| |||| Sbjct 48505 GC-AGTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGG 48447 Query 76133 TGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTA 76192 ||||| ||| || ||||| || | ||||| || || || || || || || Sbjct 48446 TGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTG 48387 Query 76193 TTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA 76252 || || || | | || | | || || | ||| | ||| ||| ||| || Sbjct 48386 TTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCT 48327 Query 76253 TCTA-----TCAC--AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTC 76305 || | ||| ||| || || ||| | ||| || | ||| || ||||| ||||| Sbjct 48326 TCGACTTGGTCAACGAAAGATGGCAA-AGCAACAGAAGCCAAATTGCAGACGGCGACCTC 48268 Query 76306 ATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAG 76365 | || || || | || || || ||||| | || ||||||| || || | Sbjct 48267 GTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAA 48208 Query 76366 ATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGT 76425 || | || || || ||| |||| || | |||||| || || | || || ||||||| Sbjct 48207 GTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGT 48148 Query 76426 TTCAATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATTATAGATTTGT 76484 ||| |||| | || | || | | ||| | | || | || || ||| | | | Sbjct 48147 CTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGT-GCCTTGATTGTCTGTCGGC 48089 Query 76485 ATCG--CTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACA 76540 ||| |||| ||| |||| || | | | | | || || || || || || | Sbjct 48088 CTCGGCCTTCCTTCT--CATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTAGCAG 48033 Query 76541 TCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACC 76600 ||| ||||| ||| ||| || || || | | | ||| || || | || || |||| Sbjct 48032 TCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACC 47973 Query 76601 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 || ||||| || ||||| || |||| ||||| ||| | ||| || | | | |||| Sbjct 47972 CGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCT 47913 Query 76661 TCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCT 76720 || ||||| ||||| || | || |||| | | ||| | ||||| || || Sbjct 47912 TCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCA 47853 Query 76721 AGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 || || | || | |||| |||| || || || ||||| || | |||| ||||| Sbjct 47852 AGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTA 47793 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 || | | | |||| | ||| || | || |||||| ||||| || ||||| || | ||| Sbjct 47792 TTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATA 47733 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 || ||| || ||||| || | | || || || || || | || ||| Sbjct 47732 TAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAG 47673 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 || | || ||| || | || || ||||| ||||| || || ||| |||||| Sbjct 47672 ATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCG 47613 Query 76961 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGAT 77020 | | ||||| ||||||||| || || |||||||| || | || || || Sbjct 47612 ATCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAA 47553 Query 77021 GCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCT--ATAT 77078 || || |||||| || | || | ||||||||||| ||||| || ||||| |||| Sbjct 47552 GCGTGTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGAC--CTTCTCGATAT 47495 Query 77079 CCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCT 77138 | | |||||| || |||| || ||||||| ||| ||||| |||| ||| | || Sbjct 47494 CTTCTCCATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCT 47435 Query 77139 TATTATTTATTTTCAACAAG-TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 77197 | || | || || | ||| |||||| |||||| || || || |||||||||||||| Sbjct 47434 TCTT-GTCATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAG 47376 Query 77198 GAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATA 77257 ||| |||| ||||| | ||| | || || || | ||| | | | || | | Sbjct 47375 TTAAAATCTCGGTCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACA 47317 Query 77258 TCCATGACAGT-GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTT 77316 ||| | | | || || || || || | ||||||| || ||||| |||||||| Sbjct 47316 GTCATAAGTCTCCTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTT 47257 Query 77317 AAATAAGTCTTCCATTAC-GTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATA 77375 | | |||| || || | || || | | || || || | |||||| |||||||| | Sbjct 47256 GTAGAGGTCTGTGATGACTGCCGAGAACT-GCTTCTTCGTCTGCTTGTGAAGATTCGAGA 47198 Query 77376 CGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 | || || | ||||| || || || || || ||||| Sbjct 47197 CTGCGATGCGGGCAGCGAGGATGGCGTAATCTGGATG 47161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932466165440