Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq154 149 1e-30 seq102 138 2e-27 seq43 111 3e-19 >seq154 Length=71981 Score = 149 bits (164), Expect = 1e-30 Identities = 177/235 (75%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || || || |||| || | || |||||| || ||||||||||| | Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || || || || || || || |||| |||||| |||||| || Sbjct 40956 AAG-GTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||||||||| ||||| ||| || || | ||||| ||||| | ||||| Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTT-GCTCTTGACATTGTCGATCGTGTCACTGGATTCGA 40839 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 | || || ||||| ||||| || |||| |||||| ||||| ||||||||||| || Sbjct 40838 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTGAT 40784 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || ||| || ||||| ||||| ||| Sbjct 41244 CCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTC 41185 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || ||||| || || ||||| || || |||||||| | || || ||||| ||| Sbjct 41184 AAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGA 41125 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || ||||| |||||| || || | ||||| || || |||| || || Sbjct 41124 ATACCCTCCTTATCCTGGAT-TTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAAC 41066 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| |||||||| ||||| ||||| || || |||||||| Sbjct 41065 CTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | || || || || || |||||||| |||| | Sbjct 41700 CCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAA 41641 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| | ||| || ||||||||||||| ||||| || || |||| Sbjct 41640 AGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGA 41581 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 |||||||||||||| |||||||| | ||||| | ||||||||||| | |||| || || Sbjct 41580 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAG-AGCTCTCAAC 41522 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 41521 CTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Score = 132 bits (146), Expect = 1e-25 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||| || |||||||| || | |||| || || |||||||| || ||||| || || || Sbjct 41436 TCTTTCTGAATGTTGTAATCTGACAAG-GTTCGACCATCCTCCAGCTGTTTGCCTGCGAA 41378 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| || || ||||| |||||||| |||||||||||||| || | || ||| | Sbjct 41377 GATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTT 41318 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||| || || || | ||| |||||||| || || || || || || | ||| || || Sbjct 41317 ATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGAC 41258 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 41257 AAAAATTTGCAT 41246 >seq102 Length=189570 Score = 138 bits (152), Expect = 2e-27 Identities = 140/180 (78%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| ||||||||||||| || || |||||||| || || || || || || || ||| Sbjct 7820 TTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAATC 7761 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030 || ||||| ||||| ||| |||||||||||| | |||||| ||||| || || | || Sbjct 7760 AATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATC-TTGCTCTTGACATTGTC 7702 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 7701 GATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGAA 7642 >seq43 Length=153456 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || |||||||| |||| || || || |||||||||||||| Sbjct 109528 ACCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 109469 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| ||||| || ||||| |||||||| || || || ||| || Sbjct 109468 AAGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGG 109409 Query 282992 AATACCCTCCTTGTCT 283007 |||||||||||||||| Sbjct 109408 AATACCCTCCTTGTCT 109393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736289737918