Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq154 158 3e-33
seq102 129 1e-24
seq43 84.2 5e-11
>seq154
Length=71981
Score = 158 bits (174), Expect = 3e-33
Identities = 165/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||||||||||| ||||| || || ||||| |||||| || ||
Sbjct 41249 CAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCTGAT 41308
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || || || || ||||| ||||| || || || ||||||||
Sbjct 41309 ACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAG 41368
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||| || |||||||| || ||||| | || |||| | ||||| ||| |
Sbjct 41369 CGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAAC-CTTGTCAGATTACAACAT 41427
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
|| ||||| || |||||||| ||||| |||||
Sbjct 41428 TCAGAAAGAGTCTACACTGCACCTTGTGCTGAGA 41461
Score = 141 bits (156), Expect = 2e-28
Identities = 157/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || ||||| || || || || ||| | ||||| || ||||| |||
Sbjct 41477 CAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCTGAC 41536
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||| |||||||| || || || || ||||| ||||||
Sbjct 41537 ACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAGCAA 41596
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| |||||||| || | || || || | |||||| | ||||| ||| |
Sbjct 41597 CGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAACATT 41656
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || |||||||| |||| ||
Sbjct 41657 CAGAAGGAGAGTACACTGCA-CTTGGTT 41683
Score = 132 bits (146), Expect = 1e-25
Identities = 161/215 (75%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| || ||||| || || || || |||||||| ||||| |||
Sbjct 40787 AAAATGC---AGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAA 40843
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
| ||||| ||||| || ||||| |||||||| ||||| || || || |||||
Sbjct 40844 TCCAGTGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCT 40903
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093
||||||||||| || || ||||| || || ||||| ||||| || | || |||| |||
Sbjct 40904 GACCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCAC-CTTGAGCGA 40962
Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| | || ||||||||||| || || ||||
Sbjct 40963 CTACAACATTCAGAAAGAATCAACCCTCCA-CTTG 40996
>seq102
Length=189570
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || || || || || || |||||||| ||||| || ||||||||| |||
Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||| ||| || || ||||| || |||||||||||| |
Sbjct 7702 GACAATGTCAAGAGCAAGATCCAGGTCAAGGAGGGTATCCCGCCAGACCAGCAACGATTG 7761
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|| ||||| ||||| ||||| |||||||| | ||||| | || || ||| | |||||
Sbjct 7762 ATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAAAA 7820
>seq43
Length=153456
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || ||||| |||||||||||||| ||| |||||||
Sbjct 109251 CAGATCTTCGTAAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCAGAC 109310
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCA 178012
|||||||| || ||||| ||||||||
Sbjct 109311 ACCATCGACAATGTCAAGTCCAAGATTCA 109339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203727853251098
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |