Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq154 158 3e-33 seq102 129 1e-24 seq43 84.2 5e-11 >seq154 Length=71981 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||||||||| ||||| || || ||||| |||||| || || Sbjct 41249 CAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCTGAT 41308 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || || || ||||| ||||| || || || |||||||| Sbjct 41309 ACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAG 41368 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || |||||||| || ||||| | || |||| | ||||| ||| | Sbjct 41369 CGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAAC-CTTGTCAGATTACAACAT 41427 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || ||||| || |||||||| ||||| ||||| Sbjct 41428 TCAGAAAGAGTCTACACTGCACCTTGTGCTGAGA 41461 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || || || || ||| | ||||| || ||||| ||| Sbjct 41477 CAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCTGAC 41536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||||| || || || || ||||| |||||| Sbjct 41537 ACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAGCAA 41596 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| |||||||| || | || || || | |||||| | ||||| ||| | Sbjct 41597 CGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAACATT 41656 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || |||||||| |||| || Sbjct 41657 CAGAAGGAGAGTACACTGCA-CTTGGTT 41683 Score = 132 bits (146), Expect = 1e-25 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || ||||| || || || || |||||||| ||||| ||| Sbjct 40787 AAAATGC---AGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAA 40843 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 | ||||| ||||| || ||||| |||||||| ||||| || || || ||||| Sbjct 40844 TCCAGTGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCT 40903 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||||||||| || || ||||| || || ||||| ||||| || | || |||| ||| Sbjct 40904 GACCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCAC-CTTGAGCGA 40962 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | || ||||||||||| || || |||| Sbjct 40963 CTACAACATTCAGAAAGAATCAACCCTCCA-CTTG 40996 >seq102 Length=189570 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||| ||||| || ||||||||| ||| Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||| ||| || || ||||| || |||||||||||| | Sbjct 7702 GACAATGTCAAGAGCAAGATCCAGGTCAAGGAGGGTATCCCGCCAGACCAGCAACGATTG 7761 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||| ||||| ||||| |||||||| | ||||| | || || ||| | ||||| Sbjct 7762 ATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAAAA 7820 >seq43 Length=153456 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||||||||| ||| ||||||| Sbjct 109251 CAGATCTTCGTAAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTCGAATCCTCAGAC 109310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCA 178012 |||||||| || ||||| |||||||| Sbjct 109311 ACCATCGACAATGTCAAGTCCAAGATTCA 109339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727853251098