Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq154 118 1e-21 seq43 98.7 9e-16 seq102 86.0 6e-12 >seq154 Length=71981 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || || || ||||||||||| |||||| Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || |||||||| || ||||| ||||| || || ||||| | || Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || ||||||||| || || ||| || | || | ||||| || || || Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCG--ATCGTGTCACTGGATTCG 40840 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || || ||||| ||||| ||||| |||||||| || Sbjct 40839 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||| ||||| || ||||||||||||||||| || || || Sbjct 41701 GCCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGA 41642 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || | ||||| ||||| || ||||| || || || |||| || Sbjct 41641 AAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGG 41582 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC---GCTCGAC 41809 || | |||||||||| ||| || ||| || | || | |||||| ||| | Sbjct 41581 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCG--ATAGTGTCAGAGCT---C 41527 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||||| || || || || || || || ||||| |||||||| |||||| Sbjct 41526 TCAACCTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || ||||| || ||| ||||||||||| || || || | ||| || | || || Sbjct 41455 CACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCATCCTC 41396 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| ||||| ||||| |||| ||||| ||||| | |||| | |||||||| Sbjct 41395 CAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTG 41336 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 |||||| ||| |||| | | || || || ||||| || | ||||| |||| Sbjct 41335 GATTTTCGACTT-AACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTT 41277 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || || || || ||||| |||||| Sbjct 41276 TGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 >seq43 Length=153456 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || |||| ||||| || || || ||||||||| ||||| |||||| Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| |||||||||||||| |||| ||||| || || | ||| Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 109407 ATACCCTCCTTGTC 109394 >seq102 Length=189570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| |||||||| ||||| ||||| || || | || || |||||||| || ||||| | Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| || || ||||| | || | | ||||||| || ||| || ||| || | Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 ||| ||||| ||||| ||||| | || || || || |||||||| |||||||| Sbjct 7702 CGATT--GTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTAC 7645 Query 41851 GAA 41853 ||| Sbjct 7644 GAA 7642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302746000400