Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq154 118 1e-21
seq43 98.7 9e-16
seq102 86.0 6e-12
>seq154
Length=71981
Score = 118 bits (130), Expect = 1e-21
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | ||||| || || || || ||||||||||| ||||||
Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| |||| || |||||||| || ||||| ||||| || || ||||| | ||
Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
|| || ||||||||| || || ||| || | || | ||||| || || ||
Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCG--ATCGTGTCACTGGATTCG 40840
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | || || || || || ||||| ||||| ||||| |||||||| ||
Sbjct 40839 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787
Score = 116 bits (128), Expect = 3e-21
Identities = 168/234 (72%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || || || | |||| ||||| || ||||||||||||||||| || || ||
Sbjct 41701 GCCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGA 41642
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || | ||||| ||||| || ||||| || || || |||| ||
Sbjct 41641 AAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGG 41582
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC---GCTCGAC 41809
|| | |||||||||| ||| || ||| || | || | |||||| ||| |
Sbjct 41581 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCG--ATAGTGTCAGAGCT---C 41527
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| ||||||| || || || || || || || ||||| |||||||| ||||||
Sbjct 41526 TCAACCTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATG 41473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||| || ||||| || ||| ||||||||||| || || || | ||| || | || ||
Sbjct 41455 CACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCATCCTC 41396
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
||||| ||||| ||||| |||| ||||| ||||| | |||| | ||||||||
Sbjct 41395 CAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTG 41336
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
|||||| ||| |||| | | || || || ||||| || | ||||| ||||
Sbjct 41335 GATTTTCGACTT-AACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTT 41277
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| || || || || || || ||||| ||||||
Sbjct 41276 TGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245
>seq43
Length=153456
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || |||| ||||| || || || ||||||||| ||||| ||||||
Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||| |||||||||||||| |||| ||||| || || | |||
Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408
Query 41756 ACGCTCTCCTTGTC 41769
| | |||||||||
Sbjct 109407 ATACCCTCCTTGTC 109394
>seq102
Length=189570
Score = 86.0 bits (94), Expect = 6e-12
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||| |||||||| ||||| ||||| || || | || || |||||||| || ||||| |
Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| || || ||||| | || | | ||||||| || ||| || ||| || |
Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
||| ||||| ||||| ||||| | || || || || |||||||| ||||||||
Sbjct 7702 CGATT--GTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTAC 7645
Query 41851 GAA 41853
|||
Sbjct 7644 GAA 7642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302746000400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |