Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq405 183 4e-41 >seq405 Length=464752 Score = 183 bits (202), Expect = 4e-41 Identities = 632/974 (65%), Gaps = 24/974 (2%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || |||| || || || || ||||||| || | | ||| || | || ||||||||||| Sbjct 119402 GACGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTCAGTGCA 119344 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 ||| || || |||||||| | || | || |||||||| ||| || ||| Sbjct 119343 AAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATC 119284 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || | ||||| || ||||||| ||| |||| | ||| | ||| || | ||| | Sbjct 119283 CTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATACCACAG 119224 Query 53890 GACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTATACAA 53946 ||||||| || || || | || || | | ||||| | |||| | | Sbjct 119223 CTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGATGTAGAGAG 119165 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 | ||||| || || || | || | || ||||| || || | || ||||| | Sbjct 119164 CC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCACATGAG 119107 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| || |||| | || || || ||||| || | ||| || ||||| || || | Sbjct 119106 GGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAG 119047 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || | ||| | || | | ||||| || || ||||| || || |||||| | Sbjct 119046 GAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTC 118987 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | ||||| |||||||| |||| ||| |||| | | | ||||| || ||||| || Sbjct 118986 AAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACC 118927 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 |||||||| | ||| | ||| ||||| || | || | || ||| |||| ||| || || Sbjct 118926 ACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTT 118867 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGAT 54304 || | ||| ||||| |||| || ||| ||| | ||||| ||| | |||| Sbjct 118866 CGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGA- 118808 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 |||| || || || ||||| || ||||| | || || || | ||||||||||| Sbjct 118807 -GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATA 118749 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || ||||| || ||| |||||| | | || ||| ||| | || | || Sbjct 118748 CCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGG 118689 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | ||||||||| ||||| || || | || || | || ||| Sbjct 118688 GTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTG 118629 Query 54485 TACGTCTCGATA----GCT-GAGTCTAT-ATCCCATTGATGAATTCCTACTGCGACACGC 54538 || || || | | ||| | ||| | |||| ||| || || || |||||| Sbjct 118628 TAAGTTTCCAGAACACGCTCAACATTATCACCCCA------AATACCGACAGCAACACGC 118575 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | |||||||||||| | || || |||||| | | || || | ||| ||| | Sbjct 118574 ATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTC 118515 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 ||||| || || || ||||| || | ||| ||||| || || || | ||| | ||| Sbjct 118514 TCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCGAG 118455 Query 54659 TTGAGTTTATCCTT 54672 | || | ||||| Sbjct 118454 TCCAGCTCTTCCTT 118441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718275159040