Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq236 288 1e-72 seq438 125 7e-24 seq419 122 9e-23 seq191 122 9e-23 >seq236 Length=225512 Score = 288 bits (318), Expect = 1e-72 Identities = 581/855 (68%), Gaps = 18/855 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| ||| |||||| | ||||| || | |||| || || |||| |||||| Sbjct 197384 GATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGAGATCTGGCAAATGTAC 197325 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||||||||| || |||||||||| ||||||| | || || || ||||| | Sbjct 197324 AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTTTCTAAGGATCTTCAC 197265 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | ||| ||| | | |||| |||||| ||||| || ||||| Sbjct 197264 GACTGGAATAACCGCATGACTAAGGATGAGCAGTTCTTCATCTCTCACGTTCTTGCCTTC 197205 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||||||| ||||| || ||||||||||| |||||||||||||| || ||||| Sbjct 197204 TTCGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTC 197145 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | |||| || || ||||| ||||| || |||||| ||||||||| | |||||| Sbjct 197144 CAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCG 197085 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCG-CTCTTCGGAGGAGA-AGCTC 116941 || | || || || |||||||| ||| | | | || || | | | | | ||| Sbjct 197084 GAGACCTACTCTTTGCTGATCGACACCTACATTAAGGAGCCTGCTCAGCGCACATACCTC 197025 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001 || |||||||| || || || || ||| | |||||||| ||||| ||| Sbjct 197024 ------TTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTG 196971 Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061 ||||| | | || ||| | | || | |||| || || ||||| || || || Sbjct 196970 AAGTGGATTACTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTT 196911 Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121 ||||| ||||||| || || ||| ||| |||| |||||||| || || || | Sbjct 196910 GAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATG 196851 Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181 |||||||| |||||||| ||||||||| ||||| | || |||||||| || ||| Sbjct 196850 ATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGAC 196791 Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241 |||||||| | || ||| || || | || || ||| | | || ||| Sbjct 196790 TTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCCAGCAAGCAGTTGATCCAGGAC 196731 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG- 117300 ||| |||| || || |||| ||| ||| || ||||| ||||| || || || |||| Sbjct 196730 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCC-CTGCGC 196672 Query 117301 TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360 ||| || || | ||| || ||| ||||||||||||||||||||| | || Sbjct 196671 TCTTCTCGGTATGAATGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCT 196612 Query 117361 GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420 ||| ||| || | || |||| ||||| | ||||||| | ||||| ||| | Sbjct 196611 TCTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGA 196552 Query 117421 CCTCATCTC-CTTGG 117434 |||||| ||||| Sbjct 196551 GAACATCTCTCTTGG 196537 >seq438 Length=409217 Score = 125 bits (138), Expect = 7e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||||||| | || ||||| | | |||| | | Sbjct 73466 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 73407 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| || ||| |||||||||| || || Sbjct 73406 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCT 73348 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 73347 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 73288 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 73287 GGAGTCCACTCTCCACCTGGT 73267 >seq419 Length=149002 Score = 122 bits (134), Expect = 9e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || ||||| | Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 86533 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 86475 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 86474 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 86415 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 86414 CAACATCCAGAAGG 86401 >seq191 Length=257482 Score = 122 bits (134), Expect = 9e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || || |||| | | | | | ||||| Sbjct 143839 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 143780 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| || ||| |||||||||| || || || | ||| |||| Sbjct 143779 CCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 143720 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | ||||||||| ||| |||||||||||||||||| |||| || | Sbjct 143719 AGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACCCTTC 143660 Query 40892 ATCTAGT 40898 | || || Sbjct 143659 ACCTTGT 143653 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 143117 GATACCATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 143059 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| || ||||| |||||||| Sbjct 143058 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAA 142999 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 142998 CATCCAGAAGGAGTCTACCCTCCACCTGGT 142969 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| || || || | Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| ||| ||||||| Sbjct 143573 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 143515 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || || || ||||| || || | || |||||| ||||||||| Sbjct 143514 ACAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAA 143455 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 143454 CATTCAGAAGGAGTCTACTCTCCACCTTGT 143425 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || ||||| | | Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || || | ||||| ||||| |||||| |||||||| Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | || || ||| ||||||||| Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 143226 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 143225 ATCCAGAAGGAGTCCACCCTTCA 143203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216314772480