Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq236 288 1e-72
seq438 125 7e-24
seq419 122 9e-23
seq191 122 9e-23
>seq236
Length=225512
Score = 288 bits (318), Expect = 1e-72
Identities = 581/855 (68%), Gaps = 18/855 (2%)
Strand=Plus/Minus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
|| |||||| ||| |||||| | ||||| || | |||| || || |||| ||||||
Sbjct 197384 GATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGAGATCTGGCAAATGTAC 197325
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710
|| ||||||||||| || |||||||||| ||||||| | || || || ||||| |
Sbjct 197324 AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTTTCTAAGGATCTTCAC 197265
Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767
|||||| | ||| ||| | | |||| |||||| ||||| || |||||
Sbjct 197264 GACTGGAATAACCGCATGACTAAGGATGAGCAGTTCTTCATCTCTCACGTTCTTGCCTTC 197205
Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827
||||||||| ||||| || ||||||||||| |||||||||||||| || |||||
Sbjct 197204 TTCGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTC 197145
Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887
||| | |||| || || ||||| ||||| || |||||| ||||||||| | ||||||
Sbjct 197144 CAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCG 197085
Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCG-CTCTTCGGAGGAGA-AGCTC 116941
|| | || || || |||||||| ||| | | | || || | | | | | |||
Sbjct 197084 GAGACCTACTCTTTGCTGATCGACACCTACATTAAGGAGCCTGCTCAGCGCACATACCTC 197025
Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001
|| |||||||| || || || || ||| | |||||||| ||||| |||
Sbjct 197024 ------TTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTG 196971
Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061
||||| | | || ||| | | || | |||| || || ||||| || || ||
Sbjct 196970 AAGTGGATTACTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTT 196911
Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121
||||| ||||||| || || ||| ||| |||| |||||||| || || || |
Sbjct 196910 GAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATG 196851
Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181
|||||||| |||||||| ||||||||| ||||| | || |||||||| || |||
Sbjct 196850 ATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGAC 196791
Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241
|||||||| | || ||| || || | || || ||| | | || |||
Sbjct 196790 TTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCCAGCAAGCAGTTGATCCAGGAC 196731
Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG- 117300
||| |||| || || |||| ||| ||| || ||||| ||||| || || || ||||
Sbjct 196730 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCC-CTGCGC 196672
Query 117301 TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360
||| || || | ||| || ||| ||||||||||||||||||||| | ||
Sbjct 196671 TCTTCTCGGTATGAATGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCT 196612
Query 117361 GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420
||| ||| || | || |||| ||||| | ||||||| | ||||| ||| |
Sbjct 196611 TCTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGA 196552
Query 117421 CCTCATCTC-CTTGG 117434
|||||| |||||
Sbjct 196551 GAACATCTCTCTTGG 196537
>seq438
Length=409217
Score = 125 bits (138), Expect = 7e-24
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||||||| | || ||||| | | |||| | |
Sbjct 73466 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 73407
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| ||||| || ||| |||||||||| || ||
Sbjct 73406 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCT 73348
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||
Sbjct 73347 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 73288
Query 40878 GGAGGCCACGCTGCATCTAGT 40898
|||| |||| || || || ||
Sbjct 73287 GGAGTCCACTCTCCACCTGGT 73267
>seq419
Length=149002
Score = 122 bits (134), Expect = 9e-23
Identities = 145/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || |||||| | || ||||| |
Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | |||| ||||| || || | ||||| |||||||| ||| ||||
Sbjct 86533 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 86475
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || |||| ||| ||||| |||||||| || | |||||||| |||||
Sbjct 86474 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 86415
Query 40866 CAACATCCAGAAGG 40879
||||||||||||||
Sbjct 86414 CAACATCCAGAAGG 86401
>seq191
Length=257482
Score = 122 bits (134), Expect = 9e-23
Identities = 139/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| |||| || || || |||| | | | | | |||||
Sbjct 143839 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 143780
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | ||||| ||||| || ||| |||||||||| || || || | ||| ||||
Sbjct 143779 CCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 143720
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || || | ||||||||| ||| |||||||||||||||||| |||| || |
Sbjct 143719 AGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACCCTTC 143660
Query 40892 ATCTAGT 40898
| || ||
Sbjct 143659 ACCTTGT 143653
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| |||||||| | || ||||| | |
Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || || | ||||| |||||||| ||| |||||||
Sbjct 143117 GATACCATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 143059
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| || || || |||||||| |||| || ||||| ||||||||
Sbjct 143058 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAA 142999
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 142998 CATCCAGAAGGAGTCTACCCTCCACCTGGT 142969
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| |||||||| |||| || || || |
Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| |||||||| ||| |||||||
Sbjct 143573 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 143515
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| || || || ||||| || || | || |||||| |||||||||
Sbjct 143514 ACAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAA 143455
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || || || ||
Sbjct 143454 CATTCAGAAGGAGTCTACTCTCCACCTTGT 143425
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||| ||| | || ||||| | |
Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||| || || | ||||| ||||| |||||| ||||||||
Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | ||| || || ||||| || || | || || ||| |||||||||
Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 143226
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| |||| || ||
Sbjct 143225 ATCCAGAAGGAGTCCACCCTTCA 143203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216314772480
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