Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq405 300 1e-76
seq236 174 1e-38
seq419 96.9 3e-15
seq191 95.1 1e-14
>seq405
Length=464752
Score = 300 bits (332), Expect = 1e-76
Identities = 1202/1874 (64%), Gaps = 66/1874 (4%)
Strand=Plus/Minus
Query 22133 GCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAA 22192
|| || | || ||| || || || ||||| |||||||| ||||| | |||||| | |
Sbjct 120296 GCAGCGGCTTGGGTACGCAGGTAGTACATACCCGTCTTGAGACCAAGCTTCCAACCCGCA 120237
Query 22193 AAATGTATCGACGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACT 22250
|| || || || ||| || |||| | || || |||| | || |||||||
Sbjct 120236 AAGTGCATGCTGGT-AATCTTGCCCATGGTTGGGTCCTTC-ATGTGAATGTTCAACGACT 120179
Query 22251 GACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACA 22310
|| |||||| ||||| || || || || || ||||| | | | |||||| || |
Sbjct 120178 GAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGAAA 120119
Query 22311 TTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGA 22370
| ||||| || ||||||||||| | |||| || || || ||| |||| |
Sbjct 120118 TCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGATGTTCTGAA 120059
Query 22371 CGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGG 22430
| || ||||| | ||||| || || || |||| ||||| ||| | ||
Sbjct 120058 CAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACCAA----GG 120003
Query 22431 TCAAA----TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGG 22486
|||| || | || | |||| || || || ||||| || | ||| || |||
Sbjct 120002 TCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGG 119943
Query 22487 CGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCG 22546
|| ||||||||||| || ||| | || ||||| | || ||||| ||||| ||||| |
Sbjct 119942 CGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAA 119883
Query 22547 GTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAA 22604
|| || || || ||||| ||||||| || |||||||| | | |||| || ||||
Sbjct 119882 GTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGA-- 119825
Query 22605 TTTTACTCTTGAGCATCGA---CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACA 22661
| | ||||| || || ||| |||||||| || || || |||| ||||||
Sbjct 119824 -TCTGCTCTTT--CAGAGAGTTCCAATCCCACAGGTCACTGGGGGTGACAT---CCCACA 119771
Query 22662 TATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACC 22719
| ||| | || | | || | | || | || ||| ||||| || ||| |||||
Sbjct 119770 TGTCGAACTGAAGGATACCCTGGGAGACA--GGAGAGCCCTCGTAGGTCGAGTAAGGACC 119713
Query 22720 ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGAT 22779
| | ||||| | ||||| || |||| || ||| || || ||||| |||||
Sbjct 119712 TTCAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGAT 119653
Query 22780 TTTCTTGTTCAATT--CG-GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGA 22835
| |||||| | | || || |||| ||| || | ||||| || | || ||
Sbjct 119652 CTGCTTGTTGAGCTGACGAGCCTCGGCAGAC----TCAAAAGGCATGCGAAGGGCCAGGA 119597
Query 22836 ACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTT 22895
| || || |||| |||||| || || | ||| || || |||| || || ||
Sbjct 119596 AGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTG----CTG 119541
Query 22896 TT----GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTC 22951
|| |||||| | ||| || ||| ||| || | | ||||||||| | |
Sbjct 119540 TTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACA 119481
Query 22952 ACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTA--CAAC 23007
|||| || || | | |||||||| | | | |||| ||||
Sbjct 119480 ACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTT-GTTGGTGTAGTCAAC 119422
Query 23008 AAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-G 23065
| | || |||| ||| || | ||||| || || ||||| || ||| || |
Sbjct 119421 ATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCATCA--GGAGCGCAG 119364
Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125
||||| | ||| || || || || ||| || || || |||| || |||||||
Sbjct 119363 TACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTA 119304
Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185
|| || || ||||| ||||||||| | |||| | || | || ||||| ||| |
Sbjct 119303 CTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCT 119244
Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGTG------AACACGTCGCACGTACCTGCCT 23239
|| | || || ||||| ||||||| | || ||| | ||||| |||
Sbjct 119243 TCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGC-CACGT-----CCT 119190
Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299
|| ||||||||| ||| | || |||||||| ||||||| || || || | |||
Sbjct 119189 TCCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAGCCA 119130
Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359
|| | | | || |||||||| |||| || || ||||| || |||| ||
Sbjct 119129 GGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAAC 119070
Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419
| ||| || ||||| || || ||||| ||||||||||| | |||||| || ||| |
Sbjct 119069 AAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGG 119010
Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479
||||| | || | || || ||||| || || ||||||||||| ||||||| ||||
Sbjct 119009 TTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCA 118950
Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539
|| || || || | ||| || || ||||||||||||||||| || ||||||||| | ||
Sbjct 118949 AAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACA 118890
Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599
| ||||| || || | ||||| || | ||| ||| || | ||||| |
Sbjct 118889 CGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTA 118830
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
|| || | ||| ||| || ||| || || || || || || ||||| || ||
Sbjct 118829 GCACGGATACGGTGGGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAG 118770
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719
|| || || || ||||| || ||||| ||||| || || | | |||||||| ||
Sbjct 118769 GTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAG 118710
Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779
||||| | || | | || ||| |||| ||| || || || |||||| || |||
Sbjct 118709 GAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAG 118650
Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839
| ||||||| || ||||| || || | | |||| | || || |||
Sbjct 118649 AACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAAATA 118590
Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTG 23899
|||| || || ||||| ||||||| ||||| | |||||| | ||| | || |||
Sbjct 118589 CCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTG 118530
Query 23900 AACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959
| || || || | | || || || |||||||| || | ||||| ||||| || ||
Sbjct 118529 AGAAGGTAAGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCA 118470
Query 23960 TGCACTATGGCCGA 23973
| || ||||||||
Sbjct 118469 TATACAATGGCCGA 118456
>seq236
Length=225512
Score = 174 bits (192), Expect = 1e-38
Identities = 492/748 (66%), Gaps = 21/748 (3%)
Strand=Plus/Minus
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| || ||| | |||||||| ||||| || || || || ||||||| ||| || | ||
Sbjct 197342 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAT 197283
Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA-----AAGAATCTGAGAGAAATTTT- 57680
|| ||||||||||| ||| ||| || || || ||| || ||| | || |
Sbjct 197282 CTTTCTAAGGATCTTCACGACTGGAATAACCGCATGACTAAGGAT----GAGCAGTTCTT 197227
Query 57681 -ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739
|| ||||| | || || |||||||| || || |||||||| |||||||| |||||
Sbjct 197226 CATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGT 197167
Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799
||| | || || || || || | | || || | ||||||||||| || || |
Sbjct 197166 CGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGAT 197107
Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || ||| | || || || | || || | || ||||| || ||| | |||||
Sbjct 197106 CATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTACATTAAGGA 197047
Query 57860 CAACGACGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAG 57917
| || || || || |||||||| || || || || ||| || |||||
Sbjct 197046 GCCTGCTCAGCGCACATA-CCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCC-GC 196989
Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGG 57974
||||| || ||| | | || ||||| | | || || | || || || || |
Sbjct 196988 AAGGCCGACTGGGCCCTGAAGTGGAT---TACTGACAAGGAGTCGACTTTTGCTCAGCGT 196932
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| | || || ||||| || || ||||| ||||| || || ||||| | || |||
Sbjct 196931 CTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTT 196872
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| || || || || |||||||||| |||| || ||||||| | || || ||
Sbjct 196871 TGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGT 196812
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154
|| |||||||| || || || ||||| ||||| | | ||||||| | ||| ||
Sbjct 196811 GATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCC 196752
Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214
| | | ||| |||||| ||||| || || |||| || || || ||||| |
Sbjct 196751 AGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTT 196692
Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274
||||| || || || || | ||||||||||| ||| | ||| || |||||
Sbjct 196691 ACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAATGCTGACCTCATGAAAACCTACATC 196632
Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCG 58302
||||| || |||||| | ||| || |||
Sbjct 196631 GAGTTCGTCGCCGACCGTCTTCTGGTCG 196604
>seq419
Length=149002
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 86533 TCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 86474
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || ||||||||||| ||| |||| ||
Sbjct 86473 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 86436
>seq191
Length=257482
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||||||||| ||||| || ||||| |||| ||||| | ||
Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || ||||||||| ||| | || || |||||
Sbjct 143573 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAA 143514
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || ||||| || ||| | || || || | ||| || |||
Sbjct 143513 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAAC 143454
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || ||||| || || || ||
Sbjct 143453 ATTCAGAAGGAGTCTACTCTCCACCTTGTCCT 143422
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||||||||| ||||| || ||||| | || || || | ||
Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|| | |||| | ||||| ||| || | | ||||||||| ||| | || || |||
Sbjct 143117 GATACCATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 143061
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||||| || || ||||| || ||| |||| ||| || || || ||
Sbjct 143060 CAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTAC 143001
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || ||||| ||
Sbjct 143000 AACATCCAGAAGGAGTCTACCCTCCACCTGGTTCT 142966
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| ||||| ||||| || || ||| | || || || ||||
Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | || || || || ||||||||| || | || || ||||||
Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||| || || |||||||| || ||| | || ||
Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGA 143251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763903708160
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