Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq405 300 1e-76 seq236 174 1e-38 seq419 96.9 3e-15 seq191 95.1 1e-14 >seq405 Length=464752 Score = 300 bits (332), Expect = 1e-76 Identities = 1202/1874 (64%), Gaps = 66/1874 (4%) Strand=Plus/Minus Query 22133 GCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAA 22192 || || | || ||| || || || ||||| |||||||| ||||| | |||||| | | Sbjct 120296 GCAGCGGCTTGGGTACGCAGGTAGTACATACCCGTCTTGAGACCAAGCTTCCAACCCGCA 120237 Query 22193 AAATGTATCGACGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACT 22250 || || || || ||| || |||| | || || |||| | || ||||||| Sbjct 120236 AAGTGCATGCTGGT-AATCTTGCCCATGGTTGGGTCCTTC-ATGTGAATGTTCAACGACT 120179 Query 22251 GACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACA 22310 || |||||| ||||| || || || || || ||||| | | | |||||| || | Sbjct 120178 GAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGAAA 120119 Query 22311 TTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGA 22370 | ||||| || ||||||||||| | |||| || || || ||| |||| | Sbjct 120118 TCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGATGTTCTGAA 120059 Query 22371 CGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGG 22430 | || ||||| | ||||| || || || |||| ||||| ||| | || Sbjct 120058 CAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACCAA----GG 120003 Query 22431 TCAAA----TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGG 22486 |||| || | || | |||| || || || ||||| || | ||| || ||| Sbjct 120002 TCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGG 119943 Query 22487 CGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCG 22546 || ||||||||||| || ||| | || ||||| | || ||||| ||||| ||||| | Sbjct 119942 CGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAA 119883 Query 22547 GTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAA 22604 || || || || ||||| ||||||| || |||||||| | | |||| || |||| Sbjct 119882 GTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGA-- 119825 Query 22605 TTTTACTCTTGAGCATCGA---CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACA 22661 | | ||||| || || ||| |||||||| || || || |||| |||||| Sbjct 119824 -TCTGCTCTTT--CAGAGAGTTCCAATCCCACAGGTCACTGGGGGTGACAT---CCCACA 119771 Query 22662 TATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACC 22719 | ||| | || | | || | | || | || ||| ||||| || ||| ||||| Sbjct 119770 TGTCGAACTGAAGGATACCCTGGGAGACA--GGAGAGCCCTCGTAGGTCGAGTAAGGACC 119713 Query 22720 ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGAT 22779 | | ||||| | ||||| || |||| || ||| || || ||||| ||||| Sbjct 119712 TTCAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGAT 119653 Query 22780 TTTCTTGTTCAATT--CG-GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGA 22835 | |||||| | | || || |||| ||| || | ||||| || | || || Sbjct 119652 CTGCTTGTTGAGCTGACGAGCCTCGGCAGAC----TCAAAAGGCATGCGAAGGGCCAGGA 119597 Query 22836 ACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTT 22895 | || || |||| |||||| || || | ||| || || |||| || || || Sbjct 119596 AGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTG----CTG 119541 Query 22896 TT----GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTC 22951 || |||||| | ||| || ||| ||| || | | ||||||||| | | Sbjct 119540 TTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACA 119481 Query 22952 ACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTA--CAAC 23007 |||| || || | | |||||||| | | | |||| |||| Sbjct 119480 ACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTT-GTTGGTGTAGTCAAC 119422 Query 23008 AAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-G 23065 | | || |||| ||| || | ||||| || || ||||| || ||| || | Sbjct 119421 ATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCATCA--GGAGCGCAG 119364 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | ||| || || || || ||| || || || |||| || ||||||| Sbjct 119363 TACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTA 119304 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || || ||||| ||||||||| | |||| | || | || ||||| ||| | Sbjct 119303 CTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCT 119244 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGTG------AACACGTCGCACGTACCTGCCT 23239 || | || || ||||| ||||||| | || ||| | ||||| ||| Sbjct 119243 TCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGC-CACGT-----CCT 119190 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || ||||||||| ||| | || |||||||| ||||||| || || || | ||| Sbjct 119189 TCCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAGCCA 119130 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | || |||||||| |||| || || ||||| || |||| || Sbjct 119129 GGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAAC 119070 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 | ||| || ||||| || || ||||| ||||||||||| | |||||| || ||| | Sbjct 119069 AAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGG 119010 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| | || | || || ||||| || || ||||||||||| ||||||| |||| Sbjct 119009 TTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCA 118950 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || || | ||| || || ||||||||||||||||| || ||||||||| | || Sbjct 118949 AAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACA 118890 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||| || || | ||||| || | ||| ||| || | ||||| | Sbjct 118889 CGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTA 118830 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || || | ||| ||| || ||| || || || || || || ||||| || || Sbjct 118829 GCACGGATACGGTGGGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAG 118770 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 || || || || ||||| || ||||| ||||| || || | | |||||||| || Sbjct 118769 GTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAG 118710 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 ||||| | || | | || ||| |||| ||| || || || |||||| || ||| Sbjct 118709 GAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAG 118650 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 | ||||||| || ||||| || || | | |||| | || || ||| Sbjct 118649 AACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAAATA 118590 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTG 23899 |||| || || ||||| ||||||| ||||| | |||||| | ||| | || ||| Sbjct 118589 CCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTG 118530 Query 23900 AACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 | || || || | | || || || |||||||| || | ||||| ||||| || || Sbjct 118529 AGAAGGTAAGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCA 118470 Query 23960 TGCACTATGGCCGA 23973 | || |||||||| Sbjct 118469 TATACAATGGCCGA 118456 >seq236 Length=225512 Score = 174 bits (192), Expect = 1e-38 Identities = 492/748 (66%), Gaps = 21/748 (3%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||| ||||| || || || || ||||||| ||| || | || Sbjct 197342 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAT 197283 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA-----AAGAATCTGAGAGAAATTTT- 57680 || ||||||||||| ||| ||| || || || ||| || ||| | || | Sbjct 197282 CTTTCTAAGGATCTTCACGACTGGAATAACCGCATGACTAAGGAT----GAGCAGTTCTT 197227 Query 57681 -ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || ||||| | || || |||||||| || || |||||||| |||||||| ||||| Sbjct 197226 CATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGT 197167 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| | || || || || || | | || || | ||||||||||| || || | Sbjct 197166 CGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGAT 197107 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || || | || ||||| || ||| | ||||| Sbjct 197106 CATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTACATTAAGGA 197047 Query 57860 CAACGACGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAG 57917 | || || || || |||||||| || || || || ||| || ||||| Sbjct 197046 GCCTGCTCAGCGCACATA-CCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCC-GC 196989 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGG 57974 ||||| || ||| | | || ||||| | | || || | || || || || | Sbjct 196988 AAGGCCGACTGGGCCCTGAAGTGGAT---TACTGACAAGGAGTCGACTTTTGCTCAGCGT 196932 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || || ||||| || || ||||| ||||| || || ||||| | || ||| Sbjct 196931 CTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTT 196872 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| || || || || |||||||||| |||| || ||||||| | || || || Sbjct 196871 TGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGT 196812 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 || |||||||| || || || ||||| ||||| | | ||||||| | ||| || Sbjct 196811 GATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCC 196752 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | | | ||| |||||| ||||| || || |||| || || || ||||| | Sbjct 196751 AGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTT 196692 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||||| || || || || | ||||||||||| ||| | ||| || ||||| Sbjct 196691 ACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAATGCTGACCTCATGAAAACCTACATC 196632 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCG 58302 ||||| || |||||| | ||| || ||| Sbjct 196631 GAGTTCGTCGCCGACCGTCTTCTGGTCG 196604 >seq419 Length=149002 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 86533 TCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 86474 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 86473 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 86436 >seq191 Length=257482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || ||||| |||| ||||| | || Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || ||||| Sbjct 143573 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAA 143514 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || || | ||| || ||| Sbjct 143513 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAAC 143454 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || || || Sbjct 143453 ATTCAGAAGGAGTCTACTCTCCACCTTGTCCT 143422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || ||||| | || || || | || Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| ||| || | | ||||||||| ||| | || || ||| Sbjct 143117 GATACCATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 143061 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || ||||| || ||| |||| ||| || || || || Sbjct 143060 CAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTAC 143001 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 143000 AACATCCAGAAGGAGTCTACCCTCCACCTGGTTCT 142966 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| ||||| || || ||| | || || || |||| Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || ||||||||| || | || || |||||| Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || |||||||| || ||| | || || Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGA 143251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763903708160