Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq405 224 1e-53 seq236 178 2e-39 >seq405 Length=464752 Score = 224 bits (248), Expect = 1e-53 Identities = 648/981 (66%), Gaps = 26/981 (3%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTC 79673 ||||| || |||| || || || || ||||||| || | | ||| || | || || || Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 119350 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 |||||| ||||| || ||||||||| | || | || |||||||| ||| || Sbjct 119349 AGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 119290 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 |||||| || | ||||| || ||||||| ||| |||||| ||| | ||| || | Sbjct 119289 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATA 119230 Query 79794 CCAGACGACTC-GAGCCTTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTA-TTG-TG 79849 ||| | | || ||||||| || || ||| | || || | | ||||| ||| || Sbjct 119229 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGATG 119172 Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 || | | | || || || || || | ||| |||| ||||| || |||| || | Sbjct 119171 TAGAGAGCC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGC 119114 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 |||| | | ||| || || | | || || || ||||| || | ||| || ||||| | Sbjct 119113 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 119054 Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029 | || | || | ||| | || | | |||||| || || ||||| || || | Sbjct 119053 GGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 118994 Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089 ||||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || | Sbjct 118993 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 118934 Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 80149 |||| || |||||||| | ||| | ||| ||||| || | || | || ||| |||| || Sbjct 118933 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAA 118874 Query 80150 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACT 80207 | || || || ||||| ||||| |||| || ||| ||| | ||||| ||| | Sbjct 118873 TGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGG 118814 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 |||| |||| || || || ||||| || ||||| | || || || | ||||| Sbjct 118813 CGTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 118756 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327 |||||| || || || || || || |||||| | | || ||| ||| | || | Sbjct 118755 ATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 118696 Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387 || || || || || || | ||||||||| ||||| || || | || |||| Sbjct 118695 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACAT 118636 Query 80388 TAGATTGTACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGAATTCCTACCGC 80441 || ||||| || || | | ||| | ||| | |||| ||| || || || Sbjct 118635 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCA------AATACCGACAGC 118582 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 80501 |||||||| | |||||||||||| | || || |||||| || | || | | ||| Sbjct 118581 AACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTA 118522 Query 80502 AGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||| | ||||| || || || ||||| || | ||| ||||| || || || | ||| Sbjct 118521 AGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAAT 118462 Query 80562 AACCGAGTTGAGTTTATCCTT 80582 |||||| || | ||||| Sbjct 118461 GGCCGAGTCCAGCTCTTCCTT 118441 >seq236 Length=225512 Score = 178 bits (196), Expect = 2e-39 Identities = 569/876 (65%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || || ||||| | || || | || | || | | | Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGA 196611 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | || ||||| || || || || |||||||| | ||| |||||| || | ||| Sbjct 196612 AGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGA 196671 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||||||||| | ||||| || || | |||||| || ||||| || || || Sbjct 196672 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 196731 Query 49909 -----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963 |||| ||| | || | |||| | | | | | ||| | | || | Sbjct 196732 TCCTGGATC-AACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGA--AAAGA--AGGCAGG 196786 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | || || ||| |||||||| || | | || || |||||||| || || | |||| Sbjct 196787 CAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGG 196846 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| | |||||||| |||||||| ||||| ||||| | ||||| |||||||| | Sbjct 196847 GCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATAC 196906 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCC 50140 | || || ||||||||||||||||| | || || || | | | ||||| |||| Sbjct 196907 CCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCC 196966 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 |||| | ||||| |||||||| | || || || || || ||||| || |||| Sbjct 196967 ACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGA 197026 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 50258 | || | | | | || |||| || || ||||||| ||||| || | || Sbjct 197027 GGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA--GTAGGTCTC 197084 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 ||| |||||||| || || ||||| || ||||| || || | || |||| ||||| Sbjct 197085 CGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTG 197144 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | | | || || || | || || || || || || |||||| ||| || || Sbjct 197145 GACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAA 197204 Query 50379 AAACGCCAATACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 || || | || || | | || || | || || | | | |||||||| || Sbjct 197205 GAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTC 197264 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 | | ||| ||||| | ||| | || || | ||||| || || ||||| ||||| || Sbjct 197265 GTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 197324 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| | |||||| || || || | ||| ||||| Sbjct 197325 GTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264777694720