Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq405 224 1e-53
seq236 178 2e-39
>seq405
Length=464752
Score = 224 bits (248), Expect = 1e-53
Identities = 648/981 (66%), Gaps = 26/981 (3%)
Strand=Plus/Minus
Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTC 79673
||||| || |||| || || || || ||||||| || | | ||| || | || || ||
Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 119350
Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733
|||||| ||||| || ||||||||| | || | || |||||||| ||| ||
Sbjct 119349 AGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 119290
Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793
|||||| || | ||||| || ||||||| ||| |||||| ||| | ||| || |
Sbjct 119289 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATA 119230
Query 79794 CCAGACGACTC-GAGCCTTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTA-TTG-TG 79849
||| | | || ||||||| || || ||| | || || | | ||||| ||| ||
Sbjct 119229 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGATG 119172
Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909
|| | | | || || || || || | ||| |||| ||||| || |||| || |
Sbjct 119171 TAGAGAGCC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGC 119114
Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969
|||| | | ||| || || | | || || || ||||| || | ||| || ||||| |
Sbjct 119113 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 119054
Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029
| || | || | ||| | || | | |||||| || || ||||| || || |
Sbjct 119053 GGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 118994
Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089
||||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || |
Sbjct 118993 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 118934
Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 80149
|||| || |||||||| | ||| | ||| ||||| || | || | || ||| |||| ||
Sbjct 118933 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAA 118874
Query 80150 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACT 80207
| || || || ||||| ||||| |||| || ||| ||| | ||||| ||| |
Sbjct 118873 TGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGG 118814
Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267
|||| |||| || || || ||||| || ||||| | || || || | |||||
Sbjct 118813 CGTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 118756
Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327
|||||| || || || || || || |||||| | | || ||| ||| | || |
Sbjct 118755 ATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 118696
Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387
|| || || || || || | ||||||||| ||||| || || | || ||||
Sbjct 118695 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACAT 118636
Query 80388 TAGATTGTACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGAATTCCTACCGC 80441
|| ||||| || || | | ||| | ||| | |||| ||| || || ||
Sbjct 118635 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCA------AATACCGACAGC 118582
Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 80501
|||||||| | |||||||||||| | || || |||||| || | || | | |||
Sbjct 118581 AACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTA 118522
Query 80502 AGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||| | ||||| || || || ||||| || | ||| ||||| || || || | |||
Sbjct 118521 AGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAAT 118462
Query 80562 AACCGAGTTGAGTTTATCCTT 80582
|||||| || | |||||
Sbjct 118461 GGCCGAGTCCAGCTCTTCCTT 118441
>seq236
Length=225512
Score = 178 bits (196), Expect = 2e-39
Identities = 569/876 (65%), Gaps = 20/876 (2%)
Strand=Plus/Plus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
|||||||| || || || ||||| | || || | || | || | | |
Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGA 196611
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| | || ||||| || || || || |||||||| | ||| |||||| || | |||
Sbjct 196612 AGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGA 196671
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
||||||||| | ||||| || || | |||||| || ||||| || || ||
Sbjct 196672 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 196731
Query 49909 -----GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 49963
|||| ||| | || | |||| | | | | | ||| | | || |
Sbjct 196732 TCCTGGATC-AACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGA--AAAGA--AGGCAGG 196786
Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023
| || || ||| |||||||| || | | || || |||||||| || || | ||||
Sbjct 196787 CAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGG 196846
Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083
|||| | |||||||| |||||||| ||||| ||||| | ||||| |||||||| |
Sbjct 196847 GCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATAC 196906
Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCC 50140
| || || ||||||||||||||||| | || || || | | | ||||| ||||
Sbjct 196907 CCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCC 196966
Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200
|||| | ||||| |||||||| | || || || || || ||||| || ||||
Sbjct 196967 ACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGA 197026
Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 50258
| || | | | | || |||| || || ||||||| ||||| || | ||
Sbjct 197027 GGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA--GTAGGTCTC 197084
Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318
||| |||||||| || || ||||| || ||||| || || | || |||| |||||
Sbjct 197085 CGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTG 197144
Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378
|| || | | | || || || | || || || || || || |||||| ||| || ||
Sbjct 197145 GACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAA 197204
Query 50379 AAACGCCAATACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435
|| || | || || | | || || | || || | | | |||||||| ||
Sbjct 197205 GAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTC 197264
Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495
| | ||| ||||| | ||| | || || | ||||| || || ||||| ||||| ||
Sbjct 197265 GTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 197324
Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531
||||| | |||||| || || || | ||| |||||
Sbjct 197325 GTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718264777694720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |