Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq405 192 8e-44 seq236 156 6e-33 >seq405 Length=464752 Score = 192 bits (212), Expect = 8e-44 Identities = 625/961 (65%), Gaps = 16/961 (2%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 || || || |||| || || || || ||||||| || | || || | ||||| ||| Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCA 119349 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 |||||||| || || |||||||| | || | || |||||||| ||| || Sbjct 119348 GTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 119289 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| || | || || || ||||||| ||| |||||| ||| | ||| || | | Sbjct 119288 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATAC 119229 Query 71878 CAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA-TTG-TGTA 71934 || | | || ||||||| || || | | ||| | ||||| ||| |||| Sbjct 119228 CACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGATGTA 119170 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 | | | || || || || || | || |||| ||||| || || || || ||| Sbjct 119169 GAGAGCC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCAC 119112 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | ||| || || | | | || || ||||| || | ||| || ||||| || Sbjct 119111 ATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGG 119052 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || | ||| | || | | |||||| || || ||||| || || ||| Sbjct 119051 GCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGG 118992 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 ||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||| Sbjct 118991 AACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTG 118932 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || |||||||| | ||| | ||| ||||| || | || | || ||| |||| ||| Sbjct 118931 TTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATG 118872 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAA 72292 || || || | ||| ||||| |||| || ||| ||| | ||||| ||| || Sbjct 118871 CCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCG 118812 Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 |||| |||| || || || ||||| || ||||| | || || || | ||||||| Sbjct 118811 TTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 118754 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 118753 AGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 118694 Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 || || || || || || | ||||||||| ||||| || || | || |||| | Sbjct 118693 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGA 118634 Query 72473 GATTGTACGTCTCAATAGCTGATTCTA---TATCCCATTGATGTATTCCTACCGCGACAC 72529 | ||||| || || | | | || | |||| | | || || || || |||| Sbjct 118633 GGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAA---ATACCGACAGCAACAC 118577 Query 72530 GCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATT 72589 |||| | ||| |||||||| | || || |||||| || | || | | ||| ||| Sbjct 118576 GCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATC 118517 Query 72590 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 72649 | ||||| || || || ||||| || | ||| ||||| || || || | ||| ||| Sbjct 118516 TCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCG 118457 Query 72650 A 72650 | Sbjct 118456 A 118456 >seq236 Length=225512 Score = 156 bits (172), Expect = 6e-33 Identities = 565/876 (64%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| || ||||| || || |||||||| | | || || || Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || ||||| | || || | || | || | | | Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGA 196611 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | || |||| ||| || || || |||||||| | ||| |||||| || | ||| Sbjct 196612 AGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGA 196671 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||||||||| | ||||| || || | ||||| ||| || || || || || Sbjct 196672 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 196731 Query 42014 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068 |||| |||| || | |||| | | | | | ||| | | || | Sbjct 196732 TCCTGGATCA-ACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGA--AAAGA--AGGCAGG 196786 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | || || ||| ||||||||||| | | || | |||||||| || || | |||| Sbjct 196787 CAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGG 196846 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188 |||| | |||||||| |||||||| || || ||||| | ||||| |||||||| | Sbjct 196847 GCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATAC 196906 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGTATCC 42245 | || || || |||||||||| ||| | || || || || | | ||||| |||| Sbjct 196907 CCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCC 196966 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 |||| | ||||| |||||||| | || || || || || ||||| || |||| Sbjct 196967 ACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGA 197026 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTC 42363 | || | | | | || |||| || || ||||||| ||||| || | || Sbjct 197027 GGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA--GTAGGTCTC 197084 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || |||||||| || || ||||| || ||||| || || | ||| |||| | ||| Sbjct 197085 CGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTG 197144 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | | | || || || | || || ||||| || || |||||| ||| || || Sbjct 197145 GACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAA 197204 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540 || || | || || || || | | || ||| || | |||||||| || Sbjct 197205 GAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTC 197264 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | | ||| ||||| | ||| | || || | ||||| || || || || ||||| || Sbjct 197265 GTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 197324 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 ||||| | |||||| || || || | || ||||| Sbjct 197325 GTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135441620480