Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq405 192 8e-44
seq236 156 6e-33
>seq405
Length=464752
Score = 192 bits (212), Expect = 8e-44
Identities = 625/961 (65%), Gaps = 16/961 (2%)
Strand=Plus/Minus
Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757
|| || || |||| || || || || ||||||| || | || || | ||||| |||
Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCA 119349
Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817
|||||||| || || |||||||| | || | || |||||||| ||| ||
Sbjct 119348 GTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 119289
Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877
|||||| || | || || || ||||||| ||| |||||| ||| | ||| || | |
Sbjct 119288 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATAC 119229
Query 71878 CAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA-TTG-TGTA 71934
|| | | || ||||||| || || | | ||| | ||||| ||| ||||
Sbjct 119228 CACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGATGTA 119170
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
| | | || || || || || | || |||| ||||| || || || || |||
Sbjct 119169 GAGAGCC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCAC 119112
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|| | | ||| || || | | | || || ||||| || | ||| || ||||| ||
Sbjct 119111 ATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGG 119052
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| | || | ||| | || | | |||||| || || ||||| || || |||
Sbjct 119051 GCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGG 118992
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174
||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || |||
Sbjct 118991 AACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTG 118932
Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234
|| || |||||||| | ||| | ||| ||||| || | || | || ||| |||| |||
Sbjct 118931 TTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATG 118872
Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAA 72292
|| || || | ||| ||||| |||| || ||| ||| | ||||| ||| ||
Sbjct 118871 CCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCG 118812
Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352
|||| |||| || || || ||||| || ||||| | || || || | |||||||
Sbjct 118811 TTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 118754
Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412
|||| || || ||||| || ||| |||||| | | || ||| ||| | || |
Sbjct 118753 AGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 118694
Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472
|| || || || || || | ||||||||| ||||| || || | || |||| |
Sbjct 118693 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGA 118634
Query 72473 GATTGTACGTCTCAATAGCTGATTCTA---TATCCCATTGATGTATTCCTACCGCGACAC 72529
| ||||| || || | | | || | |||| | | || || || || ||||
Sbjct 118633 GGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAA---ATACCGACAGCAACAC 118577
Query 72530 GCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATT 72589
|||| | ||| |||||||| | || || |||||| || | || | | ||| |||
Sbjct 118576 GCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATC 118517
Query 72590 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 72649
| ||||| || || || ||||| || | ||| ||||| || || || | ||| |||
Sbjct 118516 TCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAATGGCCG 118457
Query 72650 A 72650
|
Sbjct 118456 A 118456
>seq236
Length=225512
Score = 156 bits (172), Expect = 6e-33
Identities = 565/876 (64%), Gaps = 20/876 (2%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||| | ||||| || ||||| || || |||||||| | | || || ||
Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || ||||| | || || | || | || | | |
Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGA 196611
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
| | || |||| ||| || || || |||||||| | ||| |||||| || | |||
Sbjct 196612 AGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGA 196671
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
||||||||| | ||||| || || | ||||| ||| || || || || ||
Sbjct 196672 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 196731
Query 42014 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 42068
|||| |||| || | |||| | | | | | ||| | | || |
Sbjct 196732 TCCTGGATCA-ACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGA--AAAGA--AGGCAGG 196786
Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128
| || || ||| ||||||||||| | | || | |||||||| || || | ||||
Sbjct 196787 CAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGG 196846
Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188
|||| | |||||||| |||||||| || || ||||| | ||||| |||||||| |
Sbjct 196847 GCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATAC 196906
Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGTATCC 42245
| || || || |||||||||| ||| | || || || || | | ||||| ||||
Sbjct 196907 CCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCC 196966
Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305
|||| | ||||| |||||||| | || || || || || ||||| || ||||
Sbjct 196967 ACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGA 197026
Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTC 42363
| || | | | | || |||| || || ||||||| ||||| || | ||
Sbjct 197027 GGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA--GTAGGTCTC 197084
Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423
|| |||||||| || || ||||| || ||||| || || | ||| |||| | |||
Sbjct 197085 CGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTG 197144
Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483
|| || | | | || || || | || || ||||| || || |||||| ||| || ||
Sbjct 197145 GACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAA 197204
Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540
|| || | || || || || | | || ||| || | |||||||| ||
Sbjct 197205 GAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTC 197264
Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
| | ||| ||||| | ||| | || || | ||||| || || || || ||||| ||
Sbjct 197265 GTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 197324
Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAA 42636
||||| | |||||| || || || | || |||||
Sbjct 197325 GTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671135441620480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |