Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq236 224 1e-53 seq405 118 2e-21 >seq236 Length=225512 Score = 224 bits (248), Expect = 1e-53 Identities = 575/866 (66%), Gaps = 26/866 (3%) Strand=Plus/Minus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| ||| || || || ||| |||||||||| ||||| ||||||| || ||| Sbjct 197360 TTCCCTATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGG 197301 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||| | ||||| || ||||| || |||| ||| | | || ||||| | Sbjct 197300 ACCGCCGAGGAGATTGATCTTTCTAAGGATCTTCACGACTGGAATAACCGCATGACTAAG 197241 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| || || || ||| || | |||||||| |||| ||| || || || ||| Sbjct 197240 GATGAGCAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTC 197181 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 ||||| || || | || |||||| ||| | || || || | |||||| Sbjct 197180 AACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTT 197121 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 ||||| ||||| |||||||| |||||| | |||||||| | |||||| ||||| ||| Sbjct 197120 TACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGAC 197061 Query 125298 ATGTACATTCGCGATCCG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTG 125354 | |||||| || || || || | | || ||||| ||||| || ||||| | Sbjct 197060 ACCTACATTAAGGAGCCTGCTCAGCGCACATAC---CTCTTCAACGCCATTGACACTATT 197004 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 || | || || ||||| | |||| | |||||| |||| | |||| | Sbjct 197003 CCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAGTCGACT 196944 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 | || | | || || || || ||||| || ||||| |||||||| || ||| |||| Sbjct 196943 TTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTT 196884 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || ||||||||||||| ||||| || | |||||||| |||| | |||||| Sbjct 196883 GCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTCCAACGAG 196824 Query 125535 TTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT- 125592 |||| ||||| || ||||| || ||| ||||||||| || || || || || || Sbjct 196823 CTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTCACCTG 196764 Query 125593 ATCTGCGTCCCGAG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | | | ||| || |||| | ||| ||| ||||| | || ||||| Sbjct 196763 AACAACCGCCCCAGCAAGCAGTT-----GAT--CCAGGACATCA------TCACTGATGC 196717 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 ||| || || | ||||| || ||||| | || || | | | || ||||| Sbjct 196716 CGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAA 196657 Query 125711 CTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||| | || ||| ||||| ||||| || || || ||||| ||| || | Sbjct 196656 -TGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCG 196598 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | | |||| | ||||| |||| || ||||| || |||||| | ||| || || | Sbjct 196597 GTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTG 196538 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAG 125855 || ||||||||||| ||||||||| Sbjct 196537 GTGGAAAGACCAACTTCTTCGAGAAG 196512 >seq405 Length=464752 Score = 118 bits (130), Expect = 2e-21 Identities = 327/496 (66%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || ||| | ||| | ||| |||| || |||||||| || Sbjct 118921 CAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGAT 118980 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | || || ||| || || ||| || ||| | || Sbjct 118981 GTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATTCGCGCCCGCGAT 119040 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||| || ||| | || ||||||||||||||||| || | | ||| | Sbjct 119041 TTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAA 119100 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || || || | | ||||||| || || || ||| Sbjct 119101 TGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTAGCTGATTGCTACGGTGAGGAATTT 119160 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| ||||||| || || || ||| || | || | || | Sbjct 119161 GAGGCTCTCTACATCAAGTACGAGCGGGAAGGACGTGGCCGTCTTACCA-TCAAGGCTC- 119218 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | || || || |||||| |||||||| | || | ||| | | Sbjct 119219 AGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACTGAGACTGGTAACCCTTTCATGTTGT 119278 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | || ||||| || ||||| || |||| ||||| | |||| Sbjct 119279 ACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACCATTCGCAGTTCCA 119338 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || ||| | |||||| | |||| || ||| || || ||| ||| Sbjct 119339 ACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCGCTGTGTGCAACTTGG 119398 Query 97354 CATCGGTCAATCTGCC 97369 | |||||| ||| || Sbjct 119399 CGTCGGTCGCTCTCCC 119414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055050068480