Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq405 172 5e-38 seq191 125 7e-24 seq438 107 2e-18 seq236 102 8e-17 seq419 100 3e-16 >seq405 Length=464752 Score = 172 bits (190), Expect = 5e-38 Identities = 713/1113 (64%), Gaps = 35/1113 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || ||||||||||| ||| || | ||| || ||| | || Sbjct 119975 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTTGAAGTGTAAGGC 119916 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || ||||| || || | || | || ||||||||| |||||| Sbjct 119915 TCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGAGGCAGTGGGCATGGGCGCCACA 119856 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | |||| || |||||| | || || || | ||||||||| Sbjct 119855 AGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCTTTCAGAGAGTTCCAATCCCAC 119796 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || | | || | || |||||||||||| |||| | || |||| | | | || | Sbjct 119795 AGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCCTGGGAGACAGGAGAG 119736 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | ||| |||| || | ||||| ||||| || ||||| || Sbjct 119735 CCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCA 119676 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || ||||| ||||| || ||| |||||||| | || || | ||| | Sbjct 119675 GCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAA 119616 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 |||||||| || | || |||||||| || ||||| | || || || ||||| || Sbjct 119615 GGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGG 119556 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 || ||||||||| ||| ||| | | ||| || | || || || || Sbjct 119555 TGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGG 119496 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC-AAACCGAGC 145596 |||||||| || || || ||||| || | | ||| ||| | ||||| | | | Sbjct 119495 TTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTG 119436 Query 145597 CTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTC 145656 | || | | | ||| || | || |||| ||||||||| || || || || ||| Sbjct 119435 TTGGTGTA-GTCAACATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTC 119377 Query 145657 CTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAG 145716 || | ||| ||| | | ||||| | ||| | ||| || ||||||||||| Sbjct 119376 ATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAG 119317 Query 145717 ATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGT 145776 || | ||| ||||| || | |||||| |||||||| | |||| | || ||||| Sbjct 119316 GTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGT 119257 Query 145777 CTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTA 145836 ||| ||| | |||| ||| | || | ||| | ||| || ||||| Sbjct 119256 CTCAGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAG------CCT--TGATGGTA 119205 Query 145837 --GCGGCC---CTCTTC---TTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||||| |||| ||||| || ||||||| ||||||| | ||||||| Sbjct 119204 AGACGGCCACGTCCTTCCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAG 119145 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 ||||| | | ||| || |||| |||||| ||||| || | |||| ||||||| | Sbjct 119144 CAATCAGCTAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCA 119085 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008 || |||| ||| |||||||| || | |||||| || | ||| ||||| || || | Sbjct 119084 ACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGC---GCGA 119028 Query 146009 ---TCCTCAGCACCCATGTTTCGCTTC---AAATTAAGCACACT-ATAGATGTCCGCGTG 146061 ||||| ||| ||| |||| | | ||| | ||| | | | || ||||| Sbjct 119027 ATCTCCTCCTTACCGTGGTT---CTTCCGGAGGTCAAGGA-ACTCAAACACATCAGCGTG 118972 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTG 146118 |||||| || | || | ||| | || || || ||| |||||||| || |||| Sbjct 118971 CCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTA 118912 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||| | ||||||| ||||| |||| ||| || Sbjct 118911 ACGAGCAGTGTTGTTGAAGACACGCAGCATAGG 118879 >seq191 Length=257482 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||||| || |||||||| || Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || | |||||||||||||| ||| Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | |||||| | ||||||| Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || ||||| || || || |||||||||||||| Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 142950 GCCACCACGGAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 143009 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 143010 CAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGG 143069 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||||| | ||||||| Sbjct 143070 AATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCAGAAGACTCGAC 143129 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| ||||| || ||||| |||||||| Sbjct 143130 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||||||| Sbjct 143635 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 143694 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | |||||||||||||| || Sbjct 143695 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 143754 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| |||||| | Sbjct 143755 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 143814 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 143815 TCGAGGGTGATGGTCTTGCCGGT 143837 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| ||| | ||| || ||||| |||||||| || Sbjct 143437 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCA 143496 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||| |||||||| || || || || ||||| || ||| |||| Sbjct 143497 GCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 143556 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | |||||| | |||| || | ||| || || || ||||| Sbjct 143557 ACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTC 143616 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 143617 TTGACAAAGATCTGCAT 143633 >seq438 Length=409217 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| || | Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 73368 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 73369 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 73428 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||| | ||| ||||| || || || || |||||| Sbjct 73429 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 73467 >seq236 Length=225512 Score = 102 bits (112), Expect = 8e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCA---ACAGCAGCAC 46139 ||| || ||| | ||| || |||||||||| |||||||||| | ||| || | Sbjct 197007 TATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACA--AGGAG 196950 Query 46140 CGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGG 46199 ||||||| || ||||| | || |||||||| ||| ||||| |||| || ||||| Sbjct 196949 T-CGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGG 196891 Query 46200 CAGTTTTGCCGCCATCTTTTACAT-CAAAACCAAGGGCATCATGCCCGGCCTGACGTTTA 46258 ||||||| ||||||||| | | || | || || |||||||| |||| || Sbjct 196890 TGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGT-ATGATGCCCGGTTTGACTTTCT 196832 Query 46259 GCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||||||| || || || || ||||| || || ||||||||||| || || Sbjct 196831 CCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCT 196780 >seq419 Length=149002 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | |||||| ||||| ||||||||||| ||| ||| Sbjct 86401 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 86460 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 86461 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 86520 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | ||||||| || | ||| | || ||||| || || || || |||| Sbjct 86521 CGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 86580 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 86581 AAATCTGCAT 86590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010156728320