Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq405 192 7e-44 >seq405 Length=464752 Score = 192 bits (212), Expect = 7e-44 Identities = 640/981 (65%), Gaps = 26/981 (3%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62805 || || || |||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 119350 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 ||||||||| || || |||||||| | || | || |||||||| ||| || Sbjct 119349 AGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 119290 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 |||||| || | ||||| || ||||||| ||| |||||| ||| | ||| || | Sbjct 119289 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATA 119230 Query 62926 CCAGACGACTC-GAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTG 62981 ||| | | || ||||||| || || || | || || | | ||||| | || Sbjct 119229 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGATG 119172 Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041 || | | | || || || || || | || | | ||||| || || | || | Sbjct 119171 TAGAGAGCC--TCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGC 119114 Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101 |||| | | ||| || |||| | || || || ||||| || | ||| || ||||| | Sbjct 119113 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 119054 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 | || | || | ||| | || | | ||||| || || ||||| || || | Sbjct 119053 GGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 118994 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 ||||| | | | ||||| |||||||| |||| ||| ||||| | | | ||||| || | Sbjct 118993 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 118934 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 |||| || |||||||| | ||| | ||| ||||| || | || | || ||| |||| || Sbjct 118933 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAA 118874 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACT 63339 | || || || ||||| ||||| || | || ||| ||| | ||||| ||| | Sbjct 118873 TGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGG 118814 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 |||| |||| || || || ||||| || ||||| | || || || | ||||| Sbjct 118813 CGTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 118756 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 |||||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 118755 ATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 118696 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 || || || || || || | ||||||||| |||||||| || | || || | Sbjct 118695 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACAT 118636 Query 63520 TAGATTGTACGTCTCAATA----GCT-GAGTCTAT-ATCCCATTGATGAATTCCTACTGC 63573 || ||||| || || | | ||| | ||| | |||| ||| || || || Sbjct 118635 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCA------AATACCGACAGC 118582 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63633 |||||||| | |||||||||||| | || || |||||| | | || | | ||| Sbjct 118581 AACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTA 118522 Query 63634 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| | ||||| || || || ||||| || | ||| ||||| || || || | ||| Sbjct 118521 AGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAAT 118462 Query 63694 AACCGAGTTGAGTTTATCCTT 63714 |||||| || | ||||| Sbjct 118461 GGCCGAGTCCAGCTCTTCCTT 118441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628451660800