Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq269 150 4e-31
seq405 147 4e-30
seq31 107 4e-18
>seq269
Length=222802
Score = 150 bits (166), Expect = 4e-31
Identities = 441/674 (65%), Gaps = 13/674 (2%)
Strand=Plus/Plus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || ||||| ||||| |||||||||||||||||||| || || |||||||||| |
Sbjct 29839 GCCTGTCGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGTT 29898
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| | ||||||||||| |||| || || || || |||||| |||| |||||||
Sbjct 29899 GCAGAAGGCCGATGTCCTGTTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAACGT 29958
Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | |||||| | || | | | || | || |||||||| |||||
Sbjct 29959 CAAGTGGCTTGAGAACTACCTCAAGAGCCACACCGAAATTACCTCGCTCATTGTTTCTCA 30018
Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931
||||||||| ||||| || | || | ||| || ||||| ||| || |||
Sbjct 30019 CGACTCTGGTTTCCTTGACGAGGTCACCACTGATATTTACCACTACGAGGCCAACAAGAA 30078
Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGC 279991
| | || | || |||||||||| | |||||||| | |||||||||||| |
Sbjct 30079 GTTGGCCCTGTACCACGGCAACCTGGCCGCTTTCGTCCAGATGCGCCCTGAGGCCAAGTC 30138
Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051
||||| |||| || | | | ||| | ||||| | || || | ||
Sbjct 30139 TTACTACACCCTGTCGGCTTCGCTGGTCCAGTTCAAGTTCCCCGCTCCTGGTATCCTTAC 30198
Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109
|| ||| || || ||| || ||||| | | ||| || ||| ||
Sbjct 30199 TGGTGTCAAGTCCAACACTCGTGCCATCATCCGCATGACCGATGC--TACCTACCAGTAC 30256
Query 280110 CCCAATGGCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166
||||| | ||||| | ||| | |||| || | ||| | || || || ||
Sbjct 30257 CCCAAGGCGCCCAAGCCCTCTCTGAGCAACGTTTCTTGCCAGCTGACTCTGTCTTCGCGT 30316
Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226
||| | || || ||||||||||| |||||||| || || ||||| | |||||||
Sbjct 30317 GTTGCGATTATCGGCCCCAATGGTGCTGGTAAGTCAACTCTCATCAAGATGTTGACTGGT 30376
Query 280227 GAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283
||| | || || | |||| |||| |||||| |||||| |||| || | ||||
Sbjct 30377 GAGGTTATCC---CCTCGCAGGGTCGCGTTGAGAAGCACCCCAACCTGCGTATTGGTTAC 30433
Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343
|| ||||||||| | | ||| | || | ||| |||| | |||||| ||||| |||
Sbjct 30434 ATCAAGCAGCACGCTCTTGAGCACGTTGAAATGCACTTGGAGAAGACTCCCAACCAGTAC 30493
Query 280344 ATTCAGTGGCGCTA 280357
| |||||||| ||
Sbjct 30494 CTCCAGTGGCGTTA 30507
>seq405
Length=464752
Score = 147 bits (162), Expect = 4e-30
Identities = 451/694 (65%), Gaps = 5/694 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||| | |||||| | |||||||||||| |||||||| | | || || || | |||
Sbjct 120180 CTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGA 120121
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
|||||||| |||||||||| | ||||| || | |||||| | |||||
Sbjct 120120 AATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGATGTTCTG 120061
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294
| ||| || || | ||| || |||||||||| | || ||||| ||| | |
Sbjct 120060 AACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACCAAGGTC 120001
Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354
|| || ||||| | | ||| ||||||||| ||||||||||||| | || ||
Sbjct 120000 AACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 119941
Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414
||||||||| |||||| || ||| ||| || |||||| | |||
Sbjct 119940 CTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGT 119881
Query 293415 AGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTTCT---TGACACG 293471
|| || || ||||| | || ||| ||||| | ||||| |||| ||| |
Sbjct 119880 TGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTG 119821
Query 293472 CGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGATACT 293530
| || ||| ||| ||| | || ||| || || ||| |||| | | |||
Sbjct 119820 CTCTTTCAGAGAGTTCCAATCCCACAGGTCACTGGGG-GTGACATCCCACATGTCGAACT 119762
Query 293531 GCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAG 293590
| | |||||||| | | ||||||| ||||| |||| | | || || | || | |
Sbjct 119761 GAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGG 119702
Query 293591 AGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGA 293650
|| ||||| || || || | ||||| ||||||| ||| ||||||| |||||
Sbjct 119701 CGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGA 119642
Query 293651 GCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGAC 293710
||| ||||||| |||| ||||| ||||| || | ||| |||| |||||
Sbjct 119641 GCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGAC 119582
Query 293711 CCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCG 293770
|||| ||||| ||||||| ||| || ||||| ||||||| || |||||| ||| |
Sbjct 119581 CCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAG 119522
Query 293771 CATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
|| ||||||||||| | | || || |||
Sbjct 119521 GGTAGTGGTTCACATCAATGATACGGTTCAAGTT 119488
>seq31
Length=53689
Score = 107 bits (118), Expect = 4e-18
Identities = 171/243 (70%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383
|| ||| |||| |||| |||||||||||||| |||| |||||||||||| ||
Sbjct 44711 GCTGAGGAGGACGATGAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCGCTCGCCTAC 44770
Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443
|||| |||||||| || ||| |||| ||| | || ||||| | || || |||
Sbjct 44771 GGTGCTAAGATTCTTCTCAACCAGACCCACCTTCGTCTTAAACGTGGTCAGCGCTACGGT 44830
Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503
|| ||||||||| || | || ||| ||| || ||||| ||||| |||| |||
Sbjct 44831 CTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAG 44890
Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562
| | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| | ||
Sbjct 44891 GTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGA 44949
Query 279563 CTC 279565
|||
Sbjct 44950 CTC 44952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027830900216768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |