Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq269 150 4e-31 seq405 147 4e-30 seq31 107 4e-18 >seq269 Length=222802 Score = 150 bits (166), Expect = 4e-31 Identities = 441/674 (65%), Gaps = 13/674 (2%) Strand=Plus/Plus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || ||||| ||||| |||||||||||||||||||| || || |||||||||| | Sbjct 29839 GCCTGTCGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGTT 29898 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | | ||||||||||| |||| || || || || |||||| |||| ||||||| Sbjct 29899 GCAGAAGGCCGATGTCCTGTTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAACGT 29958 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | |||||| | || | | | || | || |||||||| ||||| Sbjct 29959 CAAGTGGCTTGAGAACTACCTCAAGAGCCACACCGAAATTACCTCGCTCATTGTTTCTCA 30018 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||| ||||| || | || | ||| || ||||| ||| || ||| Sbjct 30019 CGACTCTGGTTTCCTTGACGAGGTCACCACTGATATTTACCACTACGAGGCCAACAAGAA 30078 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGC 279991 | | || | || |||||||||| | |||||||| | |||||||||||| | Sbjct 30079 GTTGGCCCTGTACCACGGCAACCTGGCCGCTTTCGTCCAGATGCGCCCTGAGGCCAAGTC 30138 Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 ||||| |||| || | | | ||| | ||||| | || || | || Sbjct 30139 TTACTACACCCTGTCGGCTTCGCTGGTCCAGTTCAAGTTCCCCGCTCCTGGTATCCTTAC 30198 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || ||| || || ||| || ||||| | | ||| || ||| || Sbjct 30199 TGGTGTCAAGTCCAACACTCGTGCCATCATCCGCATGACCGATGC--TACCTACCAGTAC 30256 Query 280110 CCCAATGGCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 ||||| | ||||| | ||| | |||| || | ||| | || || || || Sbjct 30257 CCCAAGGCGCCCAAGCCCTCTCTGAGCAACGTTTCTTGCCAGCTGACTCTGTCTTCGCGT 30316 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| | || || ||||||||||| |||||||| || || ||||| | ||||||| Sbjct 30317 GTTGCGATTATCGGCCCCAATGGTGCTGGTAAGTCAACTCTCATCAAGATGTTGACTGGT 30376 Query 280227 GAG---ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 ||| | || || | |||| |||| |||||| |||||| |||| || | |||| Sbjct 30377 GAGGTTATCC---CCTCGCAGGGTCGCGTTGAGAAGCACCCCAACCTGCGTATTGGTTAC 30433 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || ||||||||| | | ||| | || | ||| |||| | |||||| ||||| ||| Sbjct 30434 ATCAAGCAGCACGCTCTTGAGCACGTTGAAATGCACTTGGAGAAGACTCCCAACCAGTAC 30493 Query 280344 ATTCAGTGGCGCTA 280357 | |||||||| || Sbjct 30494 CTCCAGTGGCGTTA 30507 >seq405 Length=464752 Score = 147 bits (162), Expect = 4e-30 Identities = 451/694 (65%), Gaps = 5/694 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||||||| |||||||| | | || || || | ||| Sbjct 120180 CTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGA 120121 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| | ||||| || | |||||| | ||||| Sbjct 120120 AATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGATGTTCTG 120061 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 | ||| || || | ||| || |||||||||| | || ||||| ||| | | Sbjct 120060 AACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACCAAGGTC 120001 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 || || ||||| | | ||| ||||||||| ||||||||||||| | || || Sbjct 120000 AACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 119941 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414 ||||||||| |||||| || ||| ||| || |||||| | ||| Sbjct 119940 CTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGT 119881 Query 293415 AGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCTTCT---TGACACG 293471 || || || ||||| | || ||| ||||| | ||||| |||| ||| | Sbjct 119880 TGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTG 119821 Query 293472 CGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGATACT 293530 | || ||| ||| ||| | || ||| || || ||| |||| | | ||| Sbjct 119820 CTCTTTCAGAGAGTTCCAATCCCACAGGTCACTGGGG-GTGACATCCCACATGTCGAACT 119762 Query 293531 GCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAG 293590 | | |||||||| | | ||||||| ||||| |||| | | || || | || | | Sbjct 119761 GAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGG 119702 Query 293591 AGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGA 293650 || ||||| || || || | ||||| ||||||| ||| ||||||| ||||| Sbjct 119701 CGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGA 119642 Query 293651 GCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGAC 293710 ||| ||||||| |||| ||||| ||||| || | ||| |||| ||||| Sbjct 119641 GCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGAC 119582 Query 293711 CCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCG 293770 |||| ||||| ||||||| ||| || ||||| ||||||| || |||||| ||| | Sbjct 119581 CCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAG 119522 Query 293771 CATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || ||||||||||| | | || || ||| Sbjct 119521 GGTAGTGGTTCACATCAATGATACGGTTCAAGTT 119488 >seq31 Length=53689 Score = 107 bits (118), Expect = 4e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 279324 GCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATAT 279383 || ||| |||| |||| |||||||||||||| |||| |||||||||||| || Sbjct 44711 GCTGAGGAGGACGATGAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCGCTCGCCTAC 44770 Query 279384 GGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGT 279443 |||| |||||||| || ||| |||| ||| | || ||||| | || || ||| Sbjct 44771 GGTGCTAAGATTCTTCTCAACCAGACCCACCTTCGTCTTAAACGTGGTCAGCGCTACGGT 44830 Query 279444 CTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAG 279503 || ||||||||| || | || ||| ||| || ||||| ||||| |||| ||| Sbjct 44831 CTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAG 44890 Query 279504 CTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 | | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| | || Sbjct 44891 GTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGA 44949 Query 279563 CTC 279565 ||| Sbjct 44950 CTC 44952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830900216768