Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq191 161 2e-34 seq438 159 6e-34 seq269 149 1e-30 seq236 118 2e-21 seq31 102 2e-16 >seq191 Length=257482 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || || ||||| || |||||| Sbjct 143407 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 143466 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | |||||||| || ||| Sbjct 143467 AGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGGA 143526 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||||||||| | || || || Sbjct 143527 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 143586 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || |||||||| || |||||||| Sbjct 143587 TCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 143633 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || |||||||| || |||||||| || || ||| Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||||| || || | || || || Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || |||||||||||||| |||||||| Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| ||||||||| Sbjct 143635 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 143694 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 143695 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 143754 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| || ||||| || | || || || Sbjct 143755 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 143814 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 143815 TCGAGGGTGATGGTCTTGCCGGTGA 143839 >seq438 Length=409217 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 73368 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 73369 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 73428 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||||||||| || ||||| |||||||||||||| Sbjct 73429 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 73466 >seq269 Length=222802 Score = 149 bits (164), Expect = 1e-30 Identities = 439/671 (65%), Gaps = 17/671 (3%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| |||||||||||| ||| | |||| ||| | |||| || | | | Sbjct 30507 TAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCCAAGTGCATTTCAACGTGCTCAAGA 30448 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| | | Sbjct 30447 GCGTGCTGCTTGATGTAACCAATACGCAGGTTGGGGTGCTTCTCAACGCGACCCTGCGAG 30388 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||| || || | | ||||||||| || | ||| || |||||||||||||| Sbjct 30387 GGGATAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCATTGGGGCCG 30328 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 || | ||| || || |||| | | ||| | |||||||| | || || Sbjct 30327 ATAATCGCAACACGCGAAGACAGAGTCAGCTGGCAAGAAACGTTGCTCAGAGAGGGCTTG 30268 Query 225215 GG-GCCA----GTT-TGGTAAGCAAAGGCCACGC-CACGCAGCTTCATGATGGCACGGTC 225267 || ||| || ||||| | | || || || || | ||||||||||| Sbjct 30267 GGCGCCTTGGGGTACTGGTAGGTA---GCATCGGTCATGCGG----ATGATGGCACGAGT 30215 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | ||| |||| || || ||||||||| ||| | || || | Sbjct 30214 GTTGGACTTGACACCAGTAAGGATACCAGGAGCGGGGAACTTGAACTGGACCAGCGAAGC 30155 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 | |||| ||||||||| ||||| || ||| | |||||||| | |||||| || Sbjct 30154 CGACAGGGTGTAGTAAGACTTGGCCTCAGGGCGCATCTGGACGAAAGCGGCCAGGTTGCC 30095 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTC 225447 | ||| | | | ||| ||| |||||| || ||| | | | || |||| Sbjct 30094 GTGGTACAGGGCCAACTTCTTGTTGGCCTCGTAGTGGTAAATATCAGTGGTGACCTCGTC 30035 Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| ||||||||||| || ||||||| || | | | || ||| |||||||| Sbjct 30034 AAGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATTTCGGTGTGGCTCTTGAGGTA 29975 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | ||||| |||||| || |||| |||||| |||||||||||||| | ||| Sbjct 29974 GTTCTCAAGCCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAACAG 29915 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || || || | | |||||||| | |||| |||||||| ||||| || ||||| Sbjct 29914 GACATCGGCCTTCTGCAACATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGA 29855 Query 225628 CAGGGAGCCGA 225638 ||| || |||| Sbjct 29854 CAGCGAACCGA 29844 >seq236 Length=225512 Score = 118 bits (130), Expect = 2e-21 Identities = 291/439 (66%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||| ||||| || | || || |||||||||||||| ||| || | Sbjct 196479 CAGGACACCAGCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACC 196538 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| ||| || |||| || ||| Sbjct 196539 AAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACC 196598 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | || ||||| || |||||||||||||| |||| ||||| | || Sbjct 196599 GAGAGCGACCAGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATT 196658 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| || | | |||||| | || ||| || ||| ||||| || || |||| || Sbjct 196659 CATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGC 196718 Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | || | | ||| | | |||||| || | || Sbjct 196719 ATCAGTGATGATGTCCTGGATCAACTGCTTGCTGGGGC-GGTTGTTC---AGGTGAGAGA 196774 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || |||| | | ||| || ||||| || || ||| | ||||||||| | Sbjct 196775 AAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGA 196834 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 || || ||||||||| | || || ||||||||||| || |||| | || | || | Sbjct 196835 AAGTCAAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAG 196894 Query 10351 AGAACAGAAGACCCTCCAC 10369 |||| | | |||||| || Sbjct 196895 AGAAGAAGATACCCTCAAC 196913 >seq31 Length=53689 Score = 102 bits (112), Expect = 2e-16 Identities = 430/662 (65%), Gaps = 23/662 (3%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| |||||| |||||| ||||| || |||||| Sbjct 45741 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 45682 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 45681 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 45622 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| ||||| ||||| || || | ||| || ||||| ||||| ||||| Sbjct 45621 ATGAG-CTCACCGGTAAGGACGTTGATCAGAGTCGACTTACCAGCACCGTTGGGACCAAT 45563 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGT--TGCTGAAGATCTCA 225214 ||| |||| || || || | ||| || || | | ||| | | | Sbjct 45562 GACGGCAATACGAGAACCCAGGGAGCACTGGAAAGAAATCTCCTCAATCTGGGGCTTCGA 45503 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG-ATGGCACGGTCCTTGGA 225273 || | | |||| |||| || | | ||| | | ||||| | |||||| Sbjct 45502 GGTACCG--GGGTACTGGAAGGTCA-TCTTGGTAGCACGAAGAATGGCCTTGGCCTTGGT 45446 Query 225274 AGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAG 225333 | | |||||| ||||| |||||||||||||| ||| | || | | | | || Sbjct 45445 CTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCAGAGGCGCCGAG 45386 Query 225334 GTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTG 225393 ||||||||||| || ||| | ||| ||||| | | |||||| || ||| Sbjct 45385 CTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCGGCCAGGTTACCACGGTA 45326 Query 225394 CTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGGA 225452 | | ||||||| | |||||| || | ||| ||| | ||| || |||||||| Sbjct 45325 ACGCTTAAGCTTGAAG---CGCTCGTAGTGGATAATGTGCTG-GCAGACATTGTCAAGGA 45270 Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTGCGTG 225511 | ||||||||||| || |||||||| || | || | | ||| | ||||| || Sbjct 45269 AACCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGGTGC-AGAGGT-AGTC 45215 Query 225512 AT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGAT 225570 | ||||| ||||| | || |||| ||||| ||||| ||||| |||||||| || Sbjct 45214 CTCAAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCAGAAT 45155 Query 225571 GTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAG 225630 || | | | || || ||| || |||| ||||||||| ||||| || || || || Sbjct 45154 ATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 45095 Query 225631 GG 225632 || Sbjct 45094 GG 45093 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGA 225810 |||||| || | | ||| | ||| | |||||| || ||| | || ||| || || || Sbjct 44971 GGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGGA 44912 Query 225811 AGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCC 225870 | |||||| ||||| | ||| | || || ||||| | ||||| |||||| Sbjct 44911 CTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTGCC 44852 Query 225871 CGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGA 225930 | |||||||||||| || ||||| | | || || || | ||| | || Sbjct 44851 GGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGTTTAAGACGAAGGTGGGTCTG 44792 Query 225931 GTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACC 225990 ||| || || ||||| |||| ||||| || ||||| ||| | |||||| |||||||| Sbjct 44791 GTTGAGAAGAATCTTAGCACCGTAGGCGAGCGAGAAAGTGCAGTTGCACAGATCCTCACC 44732 Query 225991 CTCCTC 225996 |||||| Sbjct 44731 CTCCTC 44726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617238914560