Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq191 161 2e-34
seq438 159 6e-34
seq269 149 1e-30
seq236 118 2e-21
seq31 102 2e-16
>seq191
Length=257482
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || || ||||| || || ||||| || ||||||
Sbjct 143407 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 143466
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | |||||||| || |||
Sbjct 143467 AGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGGA 143526
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||||||||| | || || ||
Sbjct 143527 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 143586
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || || |||||||| || ||||||||
Sbjct 143587 TCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 143633
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || |||||||| || |||||||| || || |||
Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || ||
Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||| || ||||| || || | || || ||
Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || || || |||||||||||||| ||||||||
Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405
Score = 136 bits (150), Expect = 7e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || |||||||| || |||||||| |||||||||
Sbjct 143635 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 143694
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || |||
Sbjct 143695 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 143754
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | |||||| || ||||| || | || || ||
Sbjct 143755 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 143814
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 143815 TCGAGGGTGATGGTCTTGCCGGTGA 143839
>seq438
Length=409217
Score = 159 bits (176), Expect = 6e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || || ||
Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || ||||| || |||
Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 73368
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 73369 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 73428
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||||||||| || ||||| ||||||||||||||
Sbjct 73429 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 73466
>seq269
Length=222802
Score = 149 bits (164), Expect = 1e-30
Identities = 439/671 (65%), Gaps = 17/671 (3%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||||| |||||||||||| ||| | |||| ||| | |||| || | | |
Sbjct 30507 TAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCCAAGTGCATTTCAACGTGCTCAAGA 30448
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | ||| | || |||| |||||| |||||| || ||| | |
Sbjct 30447 GCGTGCTGCTTGATGTAACCAATACGCAGGTTGGGGTGCTTCTCAACGCGACCCTGCGAG 30388
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| |||| || || | | ||||||||| || | ||| || ||||||||||||||
Sbjct 30387 GGGATAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCATTGGGGCCG 30328
Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214
|| | ||| || || |||| | | ||| | |||||||| | || ||
Sbjct 30327 ATAATCGCAACACGCGAAGACAGAGTCAGCTGGCAAGAAACGTTGCTCAGAGAGGGCTTG 30268
Query 225215 GG-GCCA----GTT-TGGTAAGCAAAGGCCACGC-CACGCAGCTTCATGATGGCACGGTC 225267
|| ||| || ||||| | | || || || || | |||||||||||
Sbjct 30267 GGCGCCTTGGGGTACTGGTAGGTA---GCATCGGTCATGCGG----ATGATGGCACGAGT 30215
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | ||| |||| || || ||||||||| ||| | || || |
Sbjct 30214 GTTGGACTTGACACCAGTAAGGATACCAGGAGCGGGGAACTTGAACTGGACCAGCGAAGC 30155
Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387
| |||| ||||||||| ||||| || ||| | |||||||| | |||||| ||
Sbjct 30154 CGACAGGGTGTAGTAAGACTTGGCCTCAGGGCGCATCTGGACGAAAGCGGCCAGGTTGCC 30095
Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTC 225447
| ||| | | | ||| ||| |||||| || ||| | | | || ||||
Sbjct 30094 GTGGTACAGGGCCAACTTCTTGTTGGCCTCGTAGTGGTAAATATCAGTGGTGACCTCGTC 30035
Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTG 225507
|||||| ||||||||||| || ||||||| || | | | || ||| ||||||||
Sbjct 30034 AAGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATTTCGGTGTGGCTCTTGAGGTA 29975
Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567
| ||||| |||||| || |||| |||||| |||||||||||||| | |||
Sbjct 29974 GTTCTCAAGCCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAACAG 29915
Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
|| || || | | |||||||| | |||| |||||||| ||||| || |||||
Sbjct 29914 GACATCGGCCTTCTGCAACATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGA 29855
Query 225628 CAGGGAGCCGA 225638
||| || ||||
Sbjct 29854 CAGCGAACCGA 29844
>seq236
Length=225512
Score = 118 bits (130), Expect = 2e-21
Identities = 291/439 (66%), Gaps = 8/439 (2%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|| ||| || ||||| ||||| || | || || |||||||||||||| ||| || |
Sbjct 196479 CAGGACACCAGCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACC 196538
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| ||| || |||| || |||
Sbjct 196539 AAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACC 196598
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || | || ||||| || |||||||||||||| |||| ||||| | ||
Sbjct 196599 GAGAGCGACCAGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATT 196658
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
||| || | | |||||| | || ||| || ||| ||||| || || |||| ||
Sbjct 196659 CATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGC 196718
Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || |||| || | || | | ||| | | |||||| || | ||
Sbjct 196719 ATCAGTGATGATGTCCTGGATCAACTGCTTGCTGGGGC-GGTTGTTC---AGGTGAGAGA 196774
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
| || || |||| | | ||| || ||||| || || ||| | ||||||||| |
Sbjct 196775 AAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGA 196834
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
|| || ||||||||| | || || ||||||||||| || |||| | || | || |
Sbjct 196835 AAGTCAAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAG 196894
Query 10351 AGAACAGAAGACCCTCCAC 10369
|||| | | |||||| ||
Sbjct 196895 AGAAGAAGATACCCTCAAC 196913
>seq31
Length=53689
Score = 102 bits (112), Expect = 2e-16
Identities = 430/662 (65%), Gaps = 23/662 (3%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||| ||| |||||| |||||| ||||| || ||||||
Sbjct 45741 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 45682
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 45681 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 45622
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| ||||| ||||| ||||| || || | ||| || ||||| ||||| |||||
Sbjct 45621 ATGAG-CTCACCGGTAAGGACGTTGATCAGAGTCGACTTACCAGCACCGTTGGGACCAAT 45563
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGT--TGCTGAAGATCTCA 225214
||| |||| || || || | ||| || || | | ||| | | |
Sbjct 45562 GACGGCAATACGAGAACCCAGGGAGCACTGGAAAGAAATCTCCTCAATCTGGGGCTTCGA 45503
Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG-ATGGCACGGTCCTTGGA 225273
|| | | |||| |||| || | | ||| | | ||||| | ||||||
Sbjct 45502 GGTACCG--GGGTACTGGAAGGTCA-TCTTGGTAGCACGAAGAATGGCCTTGGCCTTGGT 45446
Query 225274 AGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAG 225333
| | |||||| ||||| |||||||||||||| ||| | || | | | | ||
Sbjct 45445 CTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCAGAGGCGCCGAG 45386
Query 225334 GTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTG 225393
||||||||||| || ||| | ||| ||||| | | |||||| || |||
Sbjct 45385 CTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCGGCCAGGTTACCACGGTA 45326
Query 225394 CTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGGA 225452
| | ||||||| | |||||| || | ||| ||| | ||| || ||||||||
Sbjct 45325 ACGCTTAAGCTTGAAG---CGCTCGTAGTGGATAATGTGCTG-GCAGACATTGTCAAGGA 45270
Query 225453 AGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTGCGTG 225511
| ||||||||||| || |||||||| || | || | | ||| | ||||| ||
Sbjct 45269 AACCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGGTGC-AGAGGT-AGTC 45215
Query 225512 AT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGAT 225570
| ||||| ||||| | || |||| ||||| ||||| ||||| |||||||| ||
Sbjct 45214 CTCAAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCAGAAT 45155
Query 225571 GTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAG 225630
|| | | | || || ||| || |||| ||||||||| ||||| || || || ||
Sbjct 45154 ATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 45095
Query 225631 GG 225632
||
Sbjct 45094 GG 45093
Score = 84.2 bits (92), Expect = 4e-11
Identities = 166/246 (67%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGA 225810
|||||| || | | ||| | ||| | |||||| || ||| | || ||| || || ||
Sbjct 44971 GGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGGA 44912
Query 225811 AGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCC 225870
| |||||| ||||| | ||| | || || ||||| | ||||| ||||||
Sbjct 44911 CTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTGCC 44852
Query 225871 CGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGA 225930
| |||||||||||| || ||||| | | || || || | ||| | ||
Sbjct 44851 GGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGTTTAAGACGAAGGTGGGTCTG 44792
Query 225931 GTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACC 225990
||| || || ||||| |||| ||||| || ||||| ||| | |||||| ||||||||
Sbjct 44791 GTTGAGAAGAATCTTAGCACCGTAGGCGAGCGAGAAAGTGCAGTTGCACAGATCCTCACC 44732
Query 225991 CTCCTC 225996
||||||
Sbjct 44731 CTCCTC 44726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921617238914560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |