Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq236 333 5e-86
seq405 259 9e-64
>seq236
Length=225512
Score = 333 bits (368), Expect = 5e-86
Identities = 603/871 (69%), Gaps = 22/871 (3%)
Strand=Plus/Minus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||| || |||| || |||||| |||||||||||||| || ||| ||||||||||
Sbjct 197354 ATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCC 197295
Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC----TGTCTGAGAACGA 42400
||||||||||| || | ||||| || |||| | | || || || || | ||
Sbjct 197294 GAGGAGATTGATCTTTCTAAGGATCTTCACGACTGGAA-TAACCGCATGACTAAGGATGA 197236
Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460
|||| ||| || || | || ||||||||||||||||||||||| || ||||| ||
Sbjct 197235 GCAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAACGA 197176
Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520
|||| ||| | | ||| ||||| ||| | || || || ||||| |||||
Sbjct 197175 GAACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGG 197116
Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580
|||||||| || |||||| | ||||| ||| ||| | ||| || |||| ||
Sbjct 197115 TTTCCAGATCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTA 197056
Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640
||| ||| || | |||| | || ||||| ||||| || || || ||||||||
Sbjct 197055 CATTAAGGAGCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCAT 196996
Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCG 42699
||||| |||||||| || || ||||| | | | | | | || || |
Sbjct 196995 TCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATT-ACTGACAAGGAGTCGACTTTTGCTC 196937
Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759
|| | || || |||||| |||| || ||||| ||||||||||| || || || |||||||
Sbjct 196936 AGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCA 196877
Query 42760 TCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816
|||| ||||| ||||| ||| | ||||||||| | || ||||| ||||| || |
Sbjct 196876 TCTTTTGGCTGCGCAAGCGT--GGTAT-GATGCCCGGTTTGACTTTCTCCAACGAGCTTA 196820
Query 42817 TCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876
|| | || ||||| || || | ||||||||||||||| || ||||| ||||| |
Sbjct 196819 TCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCT---CACCTGA 196763
Query 42877 GGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933
|||| |||| | ||| || | ||| || ||||||||| || ||||| | || |
Sbjct 196762 ---ACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTG 196706
Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993
||||||||||||| || || | || ||| | || |||| ||||| |||||||
Sbjct 196705 AGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAATGCTGACCTCA 196646
Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC 43053
|| | |||||| ||| ||||||||||| ||| ||| | | ||| | |
Sbjct 196645 TGAAAACCTACATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGG 196586
Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113
| ||||| | | |||||||||||| |||||||||||||| | | || |||||||
Sbjct 196585 TGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGAAAGACCA 196526
Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
|||| ||||||||||| || || || |||||
Sbjct 196525 ACTTCTTCGAGAAGCGTGTTGCTGATTACCA 196495
>seq405
Length=464752
Score = 259 bits (286), Expect = 9e-64
Identities = 979/1527 (64%), Gaps = 57/1527 (4%)
Strand=Plus/Minus
Query 243940 CTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGAT 243999
|||||| ||||| | | |||||||| | | ||||| || | |||| | | |||
Sbjct 120126 CTGAGAAATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGAT 120067
Query 244000 GTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC 244059
|||||| || || || |||| |||| || | ||||||||| |||||| ||
Sbjct 120066 GTTCTGAACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACC 120007
Query 244060 CAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCACCACCTGAAACTCTCCCGACAG 244116
||| | || | | ||| || || ||| || ||||| ||||| || | ||
Sbjct 120006 -AAGGTCAACAAGGTCGCGA--AGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAA 119950
Query 244117 CACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTAT 244176
||| ||||||||||| | ||| || ||||||| || ||| |||| ||||| ||
Sbjct 119949 CACACGGCGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAAT 119890
Query 244177 CTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCT 244236
||| | || ||||| |||||||||| ||| ||||| ||| | || |||| |
Sbjct 119889 CTGGGAAGTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTG 119830
Query 244237 CTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296
|| ||| | | | || |||||| ||||||| |||| | | |||
Sbjct 119829 CTTGATCTGCTCTTTCAGAGAGTTCCAATCCCACA---------GGTCACTGGGGGTGAC 119779
Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356
|||||||||| ||||| || | |||| | ||| || |||||||||||||| |||
Sbjct 119778 ATCCCACATGTCGAACTGAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTA 119719
Query 244357 GGGACCGTCGCGCTGGGCCA----GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGG 244412
||||| || ||| | || | |||| || ||||| |||| ||| ||||
Sbjct 119718 AGGACCTTCAACAGCGGCGATGTCGCATGAAGCT----TCCAGGGCAGCGTGGTAAATGG 119663
Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCA 244472
|||| |||||| |||||| | | || |||| | | | || || |||| |
Sbjct 119662 TCTCAAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGG 119603
Query 244473 TCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG 244532
|| |||| | |||||||| ||||| || || | || ||||| | ||| ||| |||||
Sbjct 119602 CCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGC 119543
Query 244533 AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGG 244592
| | ||| ||| || ||||| ||| | || || | ||| | |||||||
Sbjct 119542 TGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGA 119483
Query 244593 TGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGA 244652
| | | ||| ||| |||| ||| |||||||| || | | || |
Sbjct 119482 CAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTG------TTGGTG- 119430
Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712
| || | ||| | | ||| ||||| |||| |||||| || || ||||| |
Sbjct 119429 TAGTCA-----ACATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCAT 119375
Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT---ACTGCACTTGATGGTGCCCA 244769
| | | ||||| || |||||| ||||| ||||| ||||| ||||| ||||
Sbjct 119374 CAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGA---ATGGTTCCCA 119318
Query 244770 GGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGG 244829
||| || || || |||| ||||||| |||||||| | |||||| || || |
Sbjct 119317 GGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAG 119258
Query 244830 TCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG 244889
|||| ||| || | || | | ||| || | | |||||||| || || |
Sbjct 119257 TCTCAGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACG-G 119199
Query 244890 CCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCG 244948
|| | ||| | |||||| | |||| || ||||| || || || || ||
Sbjct 119198 CCACGTCCTTCCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCA 119139
Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008
||| ||| |||||| ||||||||||| |||| |||||| | || || | |
Sbjct 119138 GCTAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGC 119079
Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCC 245068
| |||||| | ||||||||||| ||||| |||| | || | || | ||| |||
Sbjct 119078 TTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCC 119019
Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128
|| |||||||| || || | || ||||| || || ||||||| ||||||| |
Sbjct 119018 TTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGG 118959
Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC--- 245185
|| | || | || || || |||||||| || ||||| || | | | |||||
Sbjct 118958 TAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGA----CGTAACGAGCAGT 118903
Query 245186 -GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGAT 245244
|||||||| ||||| |||| || |||||||| ||| ||||||||||| ||
Sbjct 118902 GTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAAT 118843
Query 245245 GTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301
||||| || | | | || ||| | | || | || | || || || |||
Sbjct 118842 GTAGGAACCAGTAGCACGGATACGGTGGGCGTTG---AGACCGATACCACCCGCCATCTT 118786
Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361
|||||| | || ||| |||||| ||| || || || || || ||||| ||||||
Sbjct 118785 GGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCAT 118726
Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421
|| | || |||||||| || ||||| |||| ||| | | | |||||| || || ||
Sbjct 118725 GTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGG 118666
Query 245422 GCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
|||||| || ||| | ||||||
Sbjct 118665 AGAGGCGTGAGTGAAGAACTTGCTCGA 118639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944333911700480
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