Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq236 333 5e-86 seq405 259 9e-64 >seq236 Length=225512 Score = 333 bits (368), Expect = 5e-86 Identities = 603/871 (69%), Gaps = 22/871 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| |||||||||||||| || ||| |||||||||| Sbjct 197354 ATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCC 197295 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC----TGTCTGAGAACGA 42400 ||||||||||| || | ||||| || |||| | | || || || || | || Sbjct 197294 GAGGAGATTGATCTTTCTAAGGATCTTCACGACTGGAA-TAACCGCATGACTAAGGATGA 197236 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 |||| ||| || || | || ||||||||||||||||||||||| || ||||| || Sbjct 197235 GCAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAACGA 197176 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||| ||| | | ||| ||||| ||| | || || || ||||| ||||| Sbjct 197175 GAACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGG 197116 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||||| || |||||| | ||||| ||| ||| | ||| || |||| || Sbjct 197115 TTTCCAGATCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTA 197056 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 ||| ||| || | |||| | || ||||| ||||| || || || |||||||| Sbjct 197055 CATTAAGGAGCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCAT 196996 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCG 42699 ||||| |||||||| || || ||||| | | | | | | || || | Sbjct 196995 TCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATT-ACTGACAAGGAGTCGACTTTTGCTC 196937 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || || |||||| |||| || ||||| ||||||||||| || || || ||||||| Sbjct 196936 AGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCA 196877 Query 42760 TCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816 |||| ||||| ||||| ||| | ||||||||| | || ||||| ||||| || | Sbjct 196876 TCTTTTGGCTGCGCAAGCGT--GGTAT-GATGCCCGGTTTGACTTTCTCCAACGAGCTTA 196820 Query 42817 TCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 || | || ||||| || || | ||||||||||||||| || ||||| ||||| | Sbjct 196819 TCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCT---CACCTGA 196763 Query 42877 GGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 |||| |||| | ||| || | ||| || ||||||||| || ||||| | || | Sbjct 196762 ---ACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTG 196706 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 ||||||||||||| || || | || ||| | || |||| ||||| ||||||| Sbjct 196705 AGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAATGCTGACCTCA 196646 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC 43053 || | |||||| ||| ||||||||||| ||| ||| | | ||| | | Sbjct 196645 TGAAAACCTACATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGG 196586 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 | ||||| | | |||||||||||| |||||||||||||| | | || ||||||| Sbjct 196585 TGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGAAAGACCA 196526 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||| ||||||||||| || || || ||||| Sbjct 196525 ACTTCTTCGAGAAGCGTGTTGCTGATTACCA 196495 >seq405 Length=464752 Score = 259 bits (286), Expect = 9e-64 Identities = 979/1527 (64%), Gaps = 57/1527 (4%) Strand=Plus/Minus Query 243940 CTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGAT 243999 |||||| ||||| | | |||||||| | | ||||| || | |||| | | ||| Sbjct 120126 CTGAGAAATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTGGGGAT 120067 Query 244000 GTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC 244059 |||||| || || || |||| |||| || | ||||||||| |||||| || Sbjct 120066 GTTCTGAACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCACAGACC 120007 Query 244060 CAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCACCACCTGAAACTCTCCCGACAG 244116 ||| | || | | ||| || || ||| || ||||| ||||| || | || Sbjct 120006 -AAGGTCAACAAGGTCGCGA--AGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAA 119950 Query 244117 CACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTAT 244176 ||| ||||||||||| | ||| || ||||||| || ||| |||| ||||| || Sbjct 119949 CACACGGCGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAAT 119890 Query 244177 CTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCT 244236 ||| | || ||||| |||||||||| ||| ||||| ||| | || |||| | Sbjct 119889 CTGGGAAGTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTG 119830 Query 244237 CTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296 || ||| | | | || |||||| ||||||| |||| | | ||| Sbjct 119829 CTTGATCTGCTCTTTCAGAGAGTTCCAATCCCACA---------GGTCACTGGGGGTGAC 119779 Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||||| ||||| || | |||| | ||| || |||||||||||||| ||| Sbjct 119778 ATCCCACATGTCGAACTGAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTA 119719 Query 244357 GGGACCGTCGCGCTGGGCCA----GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGG 244412 ||||| || ||| | || | |||| || ||||| |||| ||| |||| Sbjct 119718 AGGACCTTCAACAGCGGCGATGTCGCATGAAGCT----TCCAGGGCAGCGTGGTAAATGG 119663 Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCA 244472 |||| |||||| |||||| | | || |||| | | | || || |||| | Sbjct 119662 TCTCAAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGG 119603 Query 244473 TCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG 244532 || |||| | |||||||| ||||| || || | || ||||| | ||| ||| ||||| Sbjct 119602 CCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGC 119543 Query 244533 AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGG 244592 | | ||| ||| || ||||| ||| | || || | ||| | ||||||| Sbjct 119542 TGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGA 119483 Query 244593 TGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGA 244652 | | | ||| ||| |||| ||| |||||||| || | | || | Sbjct 119482 CAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTG------TTGGTG- 119430 Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 | || | ||| | | ||| ||||| |||| |||||| || || ||||| | Sbjct 119429 TAGTCA-----ACATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCAT 119375 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT---ACTGCACTTGATGGTGCCCA 244769 | | | ||||| || |||||| ||||| ||||| ||||| ||||| |||| Sbjct 119374 CAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGA---ATGGTTCCCA 119318 Query 244770 GGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGG 244829 ||| || || || |||| ||||||| |||||||| | |||||| || || | Sbjct 119317 GGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAG 119258 Query 244830 TCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG 244889 |||| ||| || | || | | ||| || | | |||||||| || || | Sbjct 119257 TCTCAGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACG-G 119199 Query 244890 CCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCG 244948 || | ||| | |||||| | |||| || ||||| || || || || || Sbjct 119198 CCACGTCCTTCCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCA 119139 Query 244949 TCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTC 245008 ||| ||| |||||| ||||||||||| |||| |||||| | || || | | Sbjct 119138 GCTAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGC 119079 Query 245009 TGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCC 245068 | |||||| | ||||||||||| ||||| |||| | || | || | ||| ||| Sbjct 119078 TTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCC 119019 Query 245069 GAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATG 245128 || |||||||| || || | || ||||| || || ||||||| ||||||| | Sbjct 119018 TTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGG 118959 Query 245129 TAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC--- 245185 || | || | || || || |||||||| || ||||| || | | | ||||| Sbjct 118958 TAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGA----CGTAACGAGCAGT 118903 Query 245186 -GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGAT 245244 |||||||| ||||| |||| || |||||||| ||| ||||||||||| || Sbjct 118902 GTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAAT 118843 Query 245245 GTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| || | | | || ||| | | || | || | || || || ||| Sbjct 118842 GTAGGAACCAGTAGCACGGATACGGTGGGCGTTG---AGACCGATACCACCCGCCATCTT 118786 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | || ||| |||||| ||| || || || || || ||||| |||||| Sbjct 118785 GGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCAT 118726 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 || | || |||||||| || ||||| |||| ||| | | | |||||| || || || Sbjct 118725 GTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGG 118666 Query 245422 GCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 |||||| || ||| | |||||| Sbjct 118665 AGAGGCGTGAGTGAAGAACTTGCTCGA 118639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333911700480