Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq191 113 1e-19 seq236 107 5e-18 seq438 93.3 1e-13 seq419 93.3 1e-13 seq429 84.2 5e-11 >seq191 Length=257482 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| || || ||||| || ||||| | | Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| ||||| ||||| || ||| Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| |||| || || || || |||| ||| ||| || || Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||| ||||||||||| |||||||| Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 105 bits (116), Expect = 2e-17 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || || || ||||| || ||||| Sbjct 142948 TGGCCACCACGGAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCA 143007 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || ||||| || | || || || || ||||| |||||||| || || Sbjct 143008 GACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGG---TCC 143064 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || || || || |||||||| || ||| || ||||| || || | ||| || Sbjct 143065 GGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCAGAAGA 143123 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 143124 CTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| || || || || || | || || || || ||| Sbjct 143443 TCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAG 143502 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| || ||| || || || || ||||| || |||| || ||| Sbjct 143503 ATAAGACGCTGTTG---GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACG 143559 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || ||||| ||||| ||||| || |||||||||||| Sbjct 143560 TTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTG 143619 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 143620 ACAAAGATCTGCAT 143633 >seq236 Length=225512 Score = 107 bits (118), Expect = 5e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 || || |||||| || || ||| | || || || | ||||||||||||| || ||| Sbjct 196706 GAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAATGCTGACCTC 196647 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGA 269230 ||||| || ||||| ||||| || || ||| |||| | || |||||| | || | Sbjct 196646 ATGAAAACCTACATCGAGTTCGTCGCCGACCGT--CTTCTGGTCGCTCTCGGTAACGACA 196589 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | |||||||| | | || ||||||| ||| ||||| || || || | ||||||| Sbjct 196588 AGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGAAAGA 196529 Query 269291 CGAACTTCTTCGAAAAGCGTGT 269312 | ||||||||||| |||||||| Sbjct 196528 CCAACTTCTTCGAGAAGCGTGT 196507 >seq438 Length=409217 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||| | Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || || ||| Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTG---GTCCGGG 73365 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | || || || Sbjct 73366 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 73425 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||||| ||||| || ||||| ||||||||||| Sbjct 73426 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 73466 >seq419 Length=149002 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| || || || | || || || ||||||||| Sbjct 86403 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 86462 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || |||||||| || | || ||||| Sbjct 86463 AGGCGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 86519 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||||||||| || || || ||||| ||| Sbjct 86520 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 86579 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 86580 AAAATCTGCAT 86590 >seq429 Length=129737 Score = 84.2 bits (92), Expect = 5e-11 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 |||| ||| || ||||| | || |||||||| ||||| | || || |||||| Sbjct 61689 ACGACAGGAGTAATGAATTCTTTGAAGAACCCAGGAATCTTGAGCAGTGAAGGGAACTGA 61630 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 || || ||||| || | ||||| || || | || || |||| |||| | Sbjct 61629 ACCTGCAAGAAGTTGATCAAAAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCC 61570 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTTTG 326142 |||||||||| ||||| |||||||||| || || | || ||| | | | ||| Sbjct 61569 ATGATCATCAGGTGACCATAACGAAGCGTCTTGGTATCCGTATAAACTGTCTTGTGCTTG 61510 Query 326143 AAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCACG 326200 | || |||| | |||||| | ||||||| |||||| || || ||| ||| Sbjct 61509 AGACCCAAGAACT-GTTTGATATTTTGAATTTCTTGGTTCTTGGTAAT--TTGGTCCAAA 61453 Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248 || ||||| ||||||||||| | || |||||||| ||||| || ||| Sbjct 61452 GAAGCATCACGGACGTTCAACATCTTACCACGAAGTGGGAAAACGCCA 61405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647628783744