Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq191 107 2e-18
seq419 96.9 4e-15
seq438 86.0 7e-12
>seq191
Length=257482
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| |||| ||| || || |||| || |||||||||||||| ||
Sbjct 142986 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAA 143045
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 143046 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 143104
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || || || || || || | |||||||| ||||| || || ||||| |
Sbjct 143105 TGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCA 143164
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 143165 CGAAGATCTGCAT 143177
Score = 105 bits (116), Expect = 7e-18
Identities = 143/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || | || || || | || || |||||||||||||| ||
Sbjct 143442 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAA 143501
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || ||||| ||||| | || | || |||||||||| ||| | || | |||| ||
Sbjct 143502 GATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGA-CG 143559
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | ||||| || || || |||| |||||||| ||||| || || |||||
Sbjct 143560 TTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTG 143619
Query 42195 ACAAAGATTTGCAT 42208
|||||||| |||||
Sbjct 143620 ACAAAGATCTGCAT 143633
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || | ||||| || | || ||
Sbjct 143197 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCCTCA 143256
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||||||||||||||| || || ||||||||||| | || | | |||||||||| |
Sbjct 143257 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 143316
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | | | | || || ||| || || || | || ||||| |||
Sbjct 143317 ATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTG 143376
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || || || |||||
Sbjct 143377 CCGGTCAGGGTCTTGACGAAAATCTGCAT 143405
>seq419
Length=149002
Score = 96.9 bits (106), Expect = 4e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| |||| || || || | || || |||||||| |||||||| |
Sbjct 86401 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 86460
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | || |||||||||| ||| || |||| ||| |
Sbjct 86461 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 86519
Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| || || || || | ||||| || || ||||| || ||||| ||
Sbjct 86520 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 86579
Query 42198 AAGATTTGCATTTTCAC 42214
|| || ||||| || ||
Sbjct 86580 AAAATCTGCATCTTGAC 86596
>seq438
Length=409217
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | ||| || || | || || |||||||| ||||||||
Sbjct 73284 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 73343
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 73344 GATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 73402
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || || | |||||||| || ||||| || ||||| |
Sbjct 73403 TGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGA 73462
Query 42196 CAAA 42199
| ||
Sbjct 73463 CGAA 73466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209758008320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |