Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq405 197 1e-45 >seq405 Length=464752 Score = 197 bits (218), Expect = 1e-45 Identities = 441/656 (67%), Gaps = 12/656 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| ||||| || |||||| || ||||| |||||| | |||||| Sbjct 118483 AACTACCAGTACTTTGGATTCAAGACCTTGGAGAGATCTTACCTTCTCAAGCTTGATGGC 118542 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || |||| ||| || | Sbjct 118543 AAGATTGTCGAGCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATTTGGGGTGAT 118602 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 | | | |||| || ||| || |||| | |||| | || ||| Sbjct 118603 AATGTTGAGCGTGTTCTGGAAACTTACAACCTCATGTCGAGCAAGTTCTTCACTCACGCC 118662 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || ||||| ||| ||| | ||||| || ||| || | Sbjct 118663 TCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTA 118722 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | || | ||||||| |||||| | || Sbjct 118723 GAC-ATGAAGGAAGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGAT 118781 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || ||||| || ||||| ||| | |||| |||| ||||| | |||||| Sbjct 118782 CTCCAAGATGGCGGGTGGTATCGGTCTCAACGCCCAC--CGTATCCGTGCTACTGGTTCC 118839 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || ||||| |||||| | || |||||||| || ||||||||| Sbjct 118840 TACATTGCCGGCACCAACGGTACCTCGAACGGCATTGTTCCTATGCTGCGTGTCTTCAAC 118899 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || ||||| || ||||||||| | | | ||| |||| || | || Sbjct 118900 AACACTGCTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTAC 118959 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || ||| | ||| | ||||| || ||||||||||| || Sbjct 118960 CTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAG 119019 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | ||| | || | ||| || || ||| | || || | || ||| Sbjct 119020 GA---GGAGATTCGCGCCCGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATG 119076 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 || || || ||||| ||| || |||| || | || ||||| || || || || Sbjct 119077 AAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGG 119132 Score = 132 bits (146), Expect = 5e-26 Identities = 263/383 (69%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| || ||||||||||| | |||| ||| | ||| | |||| || ||| | Sbjct 119749 CAGGGTATCCTTCAGTTCGACATGTGGGATGTCACCCCCAGTGACCTGTGGGATTGGAAC 119808 Query 95053 GCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 |||| | | || ||| | || | ||||||| ||| ||||||||||||| |||| Sbjct 119809 TCTCTGAAAGAGCAGATCA-AGCAGA-ACGGTGTTCGCAACTCGCTGCTTGTGGCGCCCA 119866 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| ||||| || | ||||| || || |||||||||| ||||| || | ||| | Sbjct 119867 TGCCCACTGCCTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTACACTT 119926 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 | ||| | ||| | | || ||| | || || || |||| || ||||| | | Sbjct 119927 CAAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCCTTGGTTGC 119986 Query 95231 TACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 | || |||| || | | || ||| ||||| || || | ||||||| | | Sbjct 119987 TTCGCGACCTTGTTGAC-CTTGGTCTGTGGTCGGATAACATGAAGAACCGCATCATTTCG 120045 Query 95290 GCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAG 95349 | |||||| || || ||||||||||| || || | |||||||||| | || |||||| Sbjct 120046 GACAACGGTTCTGTTCAGAACATCCCCAGCATTCCCGCGGACATCAAGTCTCTGTACAAG 120105 Query 95350 ACCGTGTGGGAGATCCCGCAGCG 95372 || || |||||||| | ||||| Sbjct 120106 ACTGTTTGGGAGATTTCTCAGCG 120128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720429550080