Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq419 111 1e-19
seq191 111 1e-19
seq236 109 5e-19
seq438 105 6e-18
>seq419
Length=149002
Score = 111 bits (122), Expect = 1e-19
Identities = 125/165 (76%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009
||||| ||| || ||||| || |||||| |||||| |||||||| || || || |||
Sbjct 86427 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATG 86486
Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068
|||||||||||| ||| || ||||| |||| |||| ||||||| | |||||| ||
Sbjct 86487 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGACCTC 86545
Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||| | ||| || || || || || || || |||||||||||
Sbjct 86546 AAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 86590
>seq191
Length=257482
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || ||||| ||||| ||| | || || ||| || ||||| || |||
Sbjct 143437 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCA 143496
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | ||||| || || || || ||||||||||||||| || ||| ||||
Sbjct 143497 GCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 143556
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | ||| || |||| || | || ||||| ||||||||
Sbjct 143557 ACGTTG-TCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGT 143615
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 143616 CTTGACAAAGATCTGCAT 143633
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| || || || || || || ||||| || |||
Sbjct 142981 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 143040
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 143041 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 143100
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||| || | | |||||| || | || | || ||||||||||||||
Sbjct 143101 ACGTTG-TCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGT 143159
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 143160 CTTCACGAAGATCTGCAT 143177
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||
Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || |||||| | |||| |||||||| || || ||
Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||| | | |||| || |||| ||||||
Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || ||||||||||| || || || |||||||||||
Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | ||||| ||| || ||||| || |||
Sbjct 143665 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 143724
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| || || || || |||||||||||| ||| || ||||
Sbjct 143725 GCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 143784
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | || | ||| || | ||| || |||| ||| | || ||||||||
Sbjct 143785 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 143837
>seq236
Length=225512
Score = 109 bits (120), Expect = 5e-19
Identities = 339/517 (66%), Gaps = 31/517 (6%)
Strand=Plus/Minus
Query 47067 ATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAAACGAAAAC 47123
|| |||||| | ||| | |||||||| |||||| |||||| ||| || || ||
Sbjct 197006 ATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGA---- 196951
Query 47124 GTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGG 47182
||| ||| | || | ||| | | || || ||| || ||||| |||||||||| ||
Sbjct 196950 GTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGG 196891
Query 47183 CAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAG 47242
||||| | || |||| || | || | |||||||| | || ||
Sbjct 196890 TGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTC 196831
Query 47243 CAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA 47299
||||||||| ||||| | || || || || ||||| |||||||||| ||| | ||
Sbjct 196830 CAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTC 196771
Query 47300 CAAC----ACTAGAGTCG-ATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGC 47353
|| || | | | | ||| ||||| | ||| ||||| | |
Sbjct 196770 TCACCTGAACAACCGCCCCAGCAAGCAGTTGATC-----------CAG-GACATCATCAC 196723
Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413
|| ||||||| |||||||| |||||| | |||||||||| ||| || | | ||
Sbjct 196722 TGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGG 196663
Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473
||||| || || | |||| || |||||||| || ||||||||||| || || ||
Sbjct 196662 TATGAATGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCTTCTGGTCGC 196603
Query 47474 GCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| ||| | |||| | ||| | || || || ||||| || ||| | ||||| |
Sbjct 196602 TCT-CGGTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCT 196544
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
| || | || ||||||||||| ||||||||||| ||
Sbjct 196543 CTCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGT 196507
>seq438
Length=409217
Score = 105 bits (116), Expect = 6e-18
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || || ||||| ||| || ||||| || |||
Sbjct 73279 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 73338
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || || |||||||||||| ||| || ||||
Sbjct 73339 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 73398
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||||| | |||||| || | ||| | || || || ||||| ||
Sbjct 73399 ACGTTG-TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 73457
Query 127096 TTTTACAAAA 127105
|| || |||
Sbjct 73458 CTTGACGAAA 73467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498137195520
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