Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq419 111 1e-19 seq191 111 1e-19 seq236 109 5e-19 seq438 105 6e-18 >seq419 Length=149002 Score = 111 bits (122), Expect = 1e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || |||||| |||||| |||||||| || || || ||| Sbjct 86427 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATG 86486 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| ||| || ||||| |||| |||| ||||||| | |||||| || Sbjct 86487 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATCGTGTCCGAAGACTCGACCTC 86545 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | ||| || || || || || || || ||||||||||| Sbjct 86546 AAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 86590 >seq191 Length=257482 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | || || ||| || ||||| || ||| Sbjct 143437 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCA 143496 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || || || || ||||||||||||||| || ||| |||| Sbjct 143497 GCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 143556 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| || |||| || | || ||||| |||||||| Sbjct 143557 ACGTTG-TCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGT 143615 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 143616 CTTGACAAAGATCTGCAT 143633 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || || || || || ||||| || ||| Sbjct 142981 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 143040 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 143041 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 143100 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | | |||||| || | || | || |||||||||||||| Sbjct 143101 ACGTTG-TCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGT 143159 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 143160 CTTCACGAAGATCTGCAT 143177 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || |||||| | |||| |||||||| || || || Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | |||| || |||| |||||| Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACC 143358 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||||||||| || || || ||||||||||| Sbjct 143359 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || ||| Sbjct 143665 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 143724 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 143725 GCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 143784 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | || | ||| || | ||| || |||| ||| | || |||||||| Sbjct 143785 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 143837 >seq236 Length=225512 Score = 109 bits (120), Expect = 5e-19 Identities = 339/517 (66%), Gaps = 31/517 (6%) Strand=Plus/Minus Query 47067 ATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAAACGAAAAC 47123 || |||||| | ||| | |||||||| |||||| |||||| ||| || || || Sbjct 197006 ATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGA---- 196951 Query 47124 GTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGG 47182 ||| ||| | || | ||| | | || || ||| || ||||| |||||||||| || Sbjct 196950 GTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGG 196891 Query 47183 CAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAG 47242 ||||| | || |||| || | || | |||||||| | || || Sbjct 196890 TGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTC 196831 Query 47243 CAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA 47299 ||||||||| ||||| | || || || || ||||| |||||||||| ||| | || Sbjct 196830 CAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTC 196771 Query 47300 CAAC----ACTAGAGTCG-ATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGC 47353 || || | | | | ||| ||||| | ||| ||||| | | Sbjct 196770 TCACCTGAACAACCGCCCCAGCAAGCAGTTGATC-----------CAG-GACATCATCAC 196723 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 || ||||||| |||||||| |||||| | |||||||||| ||| || | | || Sbjct 196722 TGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGG 196663 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 ||||| || || | |||| || |||||||| || ||||||||||| || || || Sbjct 196662 TATGAATGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCTTCTGGTCGC 196603 Query 47474 GCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || ||| | |||| | ||| | || || || ||||| || ||| | ||||| | Sbjct 196602 TCT-CGGTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCT 196544 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 | || | || ||||||||||| ||||||||||| || Sbjct 196543 CTCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGT 196507 >seq438 Length=409217 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 73279 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 73338 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 73339 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 73398 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| | |||||| || | ||| | || || || ||||| || Sbjct 73399 ACGTTG-TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 73457 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 73458 CTTGACGAAA 73467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498137195520