Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq405 152 8e-32 seq236 109 9e-19 >seq405 Length=464752 Score = 152 bits (168), Expect = 8e-32 Identities = 425/636 (67%), Gaps = 12/636 (2%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACA 203942 ||| |||||||| || ||||| || || || ||| |||| | | ||||||| | | Sbjct 120279 CAGGTAGTACATACCCGTCTTGAGACCAAGCTTCCAACCCGCAAA-GTGCATGCTGGTAA 120221 Query 203943 GTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAG 204002 |||| || | | ||||| |||||||||||||| ||||| || || || |||| Sbjct 120220 TCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTCAACGACTGAGACTGATCAAT-AAAG 120162 Query 204003 GCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 || || || || || ||||| | | || || ||| ||||||||||| || |||||| Sbjct 120161 GCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTG 120102 Query 204062 AACAC-GTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGG 204119 ||| | || || ||| | || | || | || |||| | || |||||||| | Sbjct 120101 TACAGAGACT-TGATGTCC-GCGGGAATGCTGGGGATGTTCTGAACAGAACCGTTGTCCG 120044 Query 204120 CCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCA-GCTCCCGCACC 204178 || | | || || | | ||| ||||| | |||| | | || | || || | | Sbjct 120043 AAATGATGCGGTTCTTCATGTTATCCGACCACA-GACCAAGGTCAACAAGGTCGCGAAGC 119985 Query 204179 AGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTG 204238 | ||||||| | ||| || || || | || ||| | || | | | ||| Sbjct 119984 AACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTTGAA 119925 Query 204239 GTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATG 204298 ||| | || ||||| ||||||||| || | |||||| | || ||| ||||||||| Sbjct 119924 GTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGAGGCAGTGGGCATG 119865 Query 204299 GGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGT 204357 || |||| ||||| |||||||| ||||||| | | || |||| | ||||||||| | Sbjct 119864 GGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGA-TCTGCTCTTTCAGAGAGTT 119806 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 ||| || || ||||||| | || |||||||||||||||||| ||| || || Sbjct 119805 CCAATCCCACAGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCCTGGGA 119746 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 ||| || ||||| ||| |||| ||||| || | | || | | ||| || || Sbjct 119745 GACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGGCGATGTCGCATGAAGC 119686 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||| ||| | ||| ||||||||||||||||| Sbjct 119685 TTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTG 119650 >seq236 Length=225512 Score = 109 bits (120), Expect = 9e-19 Identities = 320/488 (66%), Gaps = 19/488 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| || | | || || |||||||| |||| ||||| Sbjct 196512 CTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 196571 Query 159709 CTTCACGTGATAGCGCTT--CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 | | | || ||| || | |||||||| |||| | | ||| || || || Sbjct 196572 GGTGGCCTTGTACACCTTGTCGTTA--CCGAGAGCGACCAGAAGACGGTCGGCGACGAAC 196629 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||||||| | ||| | ||| || || || || || ||| || || || Sbjct 196630 TCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCAGGGAAGAGCCTCG 196689 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTA 159885 | || |||||||||||||| |||| || || || | || | | || || | | | Sbjct 196690 GTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTTG 196749 Query 159886 CCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | ||| ||| || ||| || || ||||| |||||||| ||| || Sbjct 196750 CTGGGGCGGTTGTTCA------GGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGA 196803 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 ||||| || |||||||| | ||||||||| | | | || ||||| || |||||| Sbjct 196804 CCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCATACCACGC--- 196860 Query 160004 TTG---AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 ||| |||||||| |||| ||||||||||| || ||||| ||||| || || ||| Sbjct 196861 TTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCA 196920 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || || || | || | |||||| | | ||||| ||||| | |||||| Sbjct 196921 AAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCCCAG 196980 Query 160121 TCAGCCTT 160128 || ||||| Sbjct 196981 TCGGCCTT 196988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150747130880