Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq419 123 3e-23
seq438 118 1e-21
seq191 114 1e-20
>seq419
Length=149002
Score = 123 bits (136), Expect = 3e-23
Identities = 146/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || || ||||| | || || ||||||||||| ||||| |
Sbjct 86401 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 86460
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| |||||| ||||| ||| |
Sbjct 86461 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 86519
Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| || || || || | ||||| || || ||||| || || |||||
Sbjct 86520 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 86579
Query 46583 AAGATTTGCATTTTG 46597
|| || ||||| |||
Sbjct 86580 AAAATCTGCATCTTG 86594
>seq438
Length=409217
Score = 118 bits (130), Expect = 1e-21
Identities = 138/184 (75%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| | || || ||||||||||| |||||
Sbjct 73284 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 73343
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | | |||||||||| |||||| ||||| |||
Sbjct 73344 GATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 73402
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || || || |||| |||||||| || |||||||| || || |
Sbjct 73403 TGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGA 73462
Query 46581 CAAA 46584
| ||
Sbjct 73463 CGAA 73466
>seq191
Length=257482
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| |||||||| || || || || |||| ||
Sbjct 142969 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCC 143028
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || || || || | ||||||||||| | || | || |||||||||| |
Sbjct 143029 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 143088
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||||| ||| | | | || || || || || || | |||||||| ||
Sbjct 143089 ATCTTGCTCTTGA-CGTTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTT 143147
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || ||||| |||||
Sbjct 143148 GCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || ||||| || | || || |||||||| || |||||
Sbjct 143214 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAA 143273
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | | |||||||||| ||||||| ||| | |
Sbjct 143274 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATT 143333
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || ||| || || || | || ||||| ||||| ||||| || || ||
Sbjct 143334 GTCGATAGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGAC 143393
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 143394 GAAAATCTGCAT 143405
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || || || | || || |||||||| || || ||
Sbjct 143442 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAA 143501
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||| ||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 143502 GATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 143560
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || || || || | |||||||| ||||| ||||| || || |
Sbjct 143561 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 143620
Query 46581 CAAAGATTTGCAT 46593
||||||| |||||
Sbjct 143621 CAAAGATCTGCAT 143633
Score = 100 bits (110), Expect = 3e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| | || || ||||||||||| |||||
Sbjct 143670 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 143729
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | | |||||||||| |||||| ||||| |
Sbjct 143730 AATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 143789
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | || ||| || || || || | |||||||| ||||| ||
Sbjct 143790 GTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 143837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235234664960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |