Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq236 217 1e-51
seq438 111 2e-19
seq191 111 2e-19
seq419 109 5e-19
>seq236
Length=225512
Score = 217 bits (240), Expect = 1e-51
Identities = 582/879 (66%), Gaps = 17/879 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| || || || || ||||| ||||| || ||| | ||| || || ||||||||
Sbjct 196513 TTCTCGAAGAAGTTGGTCTTTCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 196571
Query 132684 GGCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740
|| | ||||| |||| | |||| || |||| || || | |||||| |||||
Sbjct 196572 GGTGGCCTTGTACACCTTGTCGTTACCGAG-AG--CGACCAGAAGACGGTCGGCGACGAA 196628
Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799
||||||||| |||| || ||| | || || ||| |||| || || || |
Sbjct 196629 CTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCAG-GGAAGAGCCT 196687
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
|||| || || | ||| ||| |||| || || |||| ||| ||| | | |
Sbjct 196688 CGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCT 196747
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919
||| || || | || || ||| | | ||| |||||||| || | ||||
Sbjct 196748 TGCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCT 196807
Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979
| || | || || || |||||| ||||||||| |||||||| | || || || |
Sbjct 196808 CATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCATACCACGCTTGCGCA 196867
Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039
||||||| |||| ||| ||| || || ||||||| ||||| || || || || || |
Sbjct 196868 GCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAA 196927
Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099
| || |||| | || || | || ||| | ||||| ||| ||||| |||||||
Sbjct 196928 CAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCCCAGTCGGCCT 196987
Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159
| | ||| || || || || |||||||| || | | | | | || |||
Sbjct 196988 TGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAG--GTATGTGCGCTGAGCAGG 197045
Query 133160 AACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217
| | |||||||||||| || || || | |||||||| | |||||||||
Sbjct 197046 CTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTCCGAGTGAATGTTCTCCATCAT 197105
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||||||||| || || ||| | ||| || || || |||||||||
Sbjct 197106 GATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGGACCTCAGCAGAGAAACGCTC 197165
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
||||| || |||||||| || ||||| ||||||||| ||||| || ||||| |||
Sbjct 197166 GACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGGCAAGAACGTGAGAGAT 197225
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394
||| |||| | | ||| ||| | ||||||| | ||||| || || ||
Sbjct 197226 GAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCGTGAAGATCCTTAGAAAGATC 197285
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454
| ||||||| ||||||| || || |||||||| || |||||||| ||| || ||
Sbjct 197286 AATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTG 197345
Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| | || || || | ||| || ||| |||||| ||
Sbjct 197346 GTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATC 197384
>seq438
Length=409217
Score = 111 bits (122), Expect = 2e-19
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||||||| | || |||||| | | |||| | |
Sbjct 73466 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 73407
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 73406 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCT 73348
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | |||||||| |||||||||||||| ||
Sbjct 73347 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 73288
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| | || || || |||| || |||
Sbjct 73287 GGAGTCCACTCTCCACCTGGTCCTCCGT 73260
>seq191
Length=257482
Score = 111 bits (122), Expect = 2e-19
Identities = 126/169 (75%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| |||| || ||| || |||| | | | | | | ||
Sbjct 143839 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 143780
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||||
Sbjct 143779 CCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 143720
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
| ||||| || || | ||||||||| ||| ||||||||||| |||||
Sbjct 143719 AGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGA 143671
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| |||||||| | || |||||| | |
Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | |||| | |||| || |||| ||||| ||||| |||||| | ||||
Sbjct 143117 GATACCATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 143060
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | || || || |||||||| |||| || ||||| |||||||
Sbjct 143059 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACA 143000
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | || || || |||| || ||| | | || ||||
Sbjct 142999 ACATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTCCGTGGTGGCC 142949
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||| ||| | || |||||| | |
Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | |||| || |||| ||||| ||||| || ||| | |||||
Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| || || ||||| || || | || || ||| |||||||||
Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 143226
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || || || ||||| || |||
Sbjct 143225 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGT 143190
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| |||||||| |||| || ||| || |
Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| |||||| | |||||
Sbjct 143573 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 143515
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || || | || || || ||||| || || | || |||||| |||||||||
Sbjct 143514 ACAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAA 143455
Query 38423 CATCCAAAAGGA 38434
||| || |||||
Sbjct 143454 CATTCAGAAGGA 143443
>seq419
Length=149002
Score = 109 bits (120), Expect = 5e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || |||||| | || |||||| |
Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | |||| | || || |||| ||||| ||||| |||||| | ||
Sbjct 86533 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 86475
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | ||| ||||| |||||||| || | |||||||| |||||
Sbjct 86474 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 86415
Query 38420 CAACATCCAAAAGG 38433
||||||||| ||||
Sbjct 86414 CAACATCCAGAAGG 86401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169999032320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |