Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq236 217 1e-51 seq438 111 2e-19 seq191 111 2e-19 seq419 109 5e-19 >seq236 Length=225512 Score = 217 bits (240), Expect = 1e-51 Identities = 582/879 (66%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || ||||| ||||| || ||| | ||| || || |||||||| Sbjct 196513 TTCTCGAAGAAGTTGGTCTTTCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 196571 Query 132684 GGCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | ||||| |||| | |||| || |||| || || | |||||| ||||| Sbjct 196572 GGTGGCCTTGTACACCTTGTCGTTACCGAG-AG--CGACCAGAAGACGGTCGGCGACGAA 196628 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTT 132799 ||||||||| |||| || ||| | || || ||| |||| || || || | Sbjct 196629 CTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCAG-GGAAGAGCCT 196687 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 |||| || || | ||| ||| |||| || || |||| ||| ||| | | | Sbjct 196688 CGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCT 196747 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || | || || ||| | | ||| |||||||| || | |||| Sbjct 196748 TGCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCT 196807 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | || || || |||||| ||||||||| |||||||| | || || || | Sbjct 196808 CATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCATACCACGCTTGCGCA 196867 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 ||||||| |||| ||| ||| || || ||||||| ||||| || || || || || | Sbjct 196868 GCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAA 196927 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 | || |||| | || || | || ||| | ||||| ||| ||||| ||||||| Sbjct 196928 CAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCCCAGTCGGCCT 196987 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159 | | ||| || || || || |||||||| || | | | | | || ||| Sbjct 196988 TGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAG--GTATGTGCGCTGAGCAGG 197045 Query 133160 AACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217 | | |||||||||||| || || || | |||||||| | ||||||||| Sbjct 197046 CTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTCCGAGTGAATGTTCTCCATCAT 197105 Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||||||||| || || ||| | ||| || || || ||||||||| Sbjct 197106 GATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGGACCTCAGCAGAGAAACGCTC 197165 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||| || ||||| ||||||||| ||||| || ||||| ||| Sbjct 197166 GACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGGCAAGAACGTGAGAGAT 197225 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| |||| | | ||| ||| | ||||||| | ||||| || || || Sbjct 197226 GAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCGTGAAGATCCTTAGAAAGATC 197285 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 | ||||||| ||||||| || || |||||||| || |||||||| ||| || || Sbjct 197286 AATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTG 197345 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || | || || || | ||| || ||| |||||| || Sbjct 197346 GTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATC 197384 >seq438 Length=409217 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||||||| | || |||||| | | |||| | | Sbjct 73466 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 73407 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 73406 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCT 73348 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| |||||||||||||| || Sbjct 73347 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 73288 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || |||| || ||| Sbjct 73287 GGAGTCCACTCTCCACCTGGTCCTCCGT 73260 >seq191 Length=257482 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| || ||| || |||| | | | | | | || Sbjct 143839 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 143780 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| |||| Sbjct 143779 CCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 143720 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | ||||||||| ||| ||||||||||| ||||| Sbjct 143719 AGCAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGA 143671 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| ||||| ||||| |||||| | |||| Sbjct 143117 GATACCATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACC 143060 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| |||| || ||||| ||||||| Sbjct 143059 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACA 143000 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || |||| || ||| | | || |||| Sbjct 142999 ACATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTCCGTGGTGGCC 142949 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| | || |||||| | | Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| || |||| ||||| ||||| || ||| | ||||| Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | || || ||| ||||||||| Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 143226 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| || ||| Sbjct 143225 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGT 143190 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| |||| || ||| || | Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| |||||| | ||||| Sbjct 143573 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 143515 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || || || ||||| || || | || |||||| ||||||||| Sbjct 143514 ACAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAA 143455 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 143454 CATTCAGAAGGA 143443 >seq419 Length=149002 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || |||||| | Sbjct 86593 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 86534 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 86533 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 86475 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 86474 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 86415 Query 38420 CAACATCCAAAAGG 38433 ||||||||| |||| Sbjct 86414 CAACATCCAGAAGG 86401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169999032320