Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq405 271 9e-68 seq236 127 2e-24 >seq405 Length=464752 Score = 271 bits (300), Expect = 9e-68 Identities = 1111/1725 (64%), Gaps = 51/1725 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||||||||||||| || || |||||| ||||| ||||| | || | ||| Sbjct 120189 GTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCT-GAACA-ACA 120132 Query 109560 CTTT--TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCC 109617 | || ||| ||||| ||||||||||||| | |||||| || |||||||| Sbjct 120131 GTACGCTGAGAAATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTG 120072 Query 109618 ACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAG 109677 |||||| |||| ||| || || | ||| | | |||||| | | |||||| Sbjct 120071 GGGATGTTCTGAACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCAC 120012 Query 109678 AGACCGACCTTTTTGAGATCGTCAA-CAAG-ATGCTTGTTGACCACGACAAATTCACCAG 109735 ||||| | | || ||| || ||| | | |||||| || || ||||||| Sbjct 120011 AGACCAAGGTCAACAAGGTCGCGAAGCAACCAAGG--GTTGACAACCTGGAACTCACCAG 119954 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 | | || || |||| ||||| | ||||| || ||||| ||||| ||||| || | Sbjct 119953 CCAACACACGGCGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCA 119894 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 | || || | ||| || || ||||||||||| |||| || || ||| || | ||| | Sbjct 119893 GAATCTGGGAAGTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGT 119834 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915 || ||| | | |||| || | || |||||| | | |||| | | || Sbjct 119833 TCTGCTTGATCTGCTCTTTCAGAGAGTTCCAATCCCACAGGTCACTGG-----GGGTGAC 119779 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 ||||||||| || ||||| | ||||| | ||||||| |||| | | || || Sbjct 119778 -ATCCCACATGTCGAACTGAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGT 119720 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 | | || ||||| |||| | ||| ||||||| || || || || || || || |||| Sbjct 119719 AAGGACCTTCAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCT 119660 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAA 110095 |||| || || || | | |||| ||| || | || || || | | | | Sbjct 119659 CAAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCA 119600 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || |||| || |||||||| ||||| | ||||||||| || || |||||| | Sbjct 119599 GGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGT 119540 Query 110156 GTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA 110215 || || | || ||||| ||| || |||| || || | || | Sbjct 119539 TCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAA 119480 Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC--GTT-TTCGTCTCCTTATTGA 110272 || ||| |||| || || || || | | | ||| | ||| || || | | | | Sbjct 119479 CAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---A 119423 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 |||| |||||||| | ||||| | |||||||||| ||| || || || Sbjct 119422 CATAGGCAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGT 119363 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | || | ||| || || || | ||||||||| |||| |||| ||||||||| || Sbjct 119362 ACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTAC 119303 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| |||||| |||||| || | |||| | ||| ||||||| || ||||| | | Sbjct 119302 TCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTT 119243 Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCTTCCTC 110510 ||||| || | ||| | | || | | | | | | | || | | |||||| Sbjct 119242 CCAGAATAGCATACCACAGCTTCTGAGCCTTGAT--GGTAAGACGGCCACGTCCTTCCCG 119185 Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 |||||||||| |||| | |||||||||||| ||||| ||||| | | || || Sbjct 119184 CTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTA-AGCCAGGGC 119126 Query 110571 -CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 || || ||| || | ||||| ||| | || || |||||| | ||||||||||| | Sbjct 119125 ACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAAT 119066 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | || ||||||| || ||| | || ||| ||| ||| || | ||| ||||| Sbjct 119065 CGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCT 119006 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 || || || | || || | | ||| | |||||| || || || || | || | | Sbjct 119005 TCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAG 118946 Query 110750 ATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || | |||| ||| |||| | || || || || ||| |||||||| | Sbjct 118945 CACC---AGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACAC 118889 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 |||||||||| ||| || | || ||| || || || ||| ||| | | | Sbjct 118888 GCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAG 118829 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-C 110922 |||| || |||| | | ||| |||||||||||| ||| || ||||| Sbjct 118828 CACGGATACGGTGGGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGG 118769 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 ||| |||| ||| |||| ||||| || || ||| |||| || | | | ||||| Sbjct 118768 TCT-TGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAG 118710 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 ||||| | |||||| |||| || || || |||||||| ||||| | || ||| ||| Sbjct 118709 GAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA-- 118652 Query 111043 AGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGTG 111098 ||| |||| ||||| |||||| || || || | | | | |||| | ||| Sbjct 118651 AGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAAC--ACGCTCAACATTATCACCCCA 118594 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158 |||||| | ||||| ||||| | ||| | ||||| |||| | ||| ||||||| Sbjct 118593 AATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAA- 118535 Query 111159 ACGCT---GAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||| |||||||| |||| | |||||||| |||||||| Sbjct 118534 --GCTTGAGAAGGTAAGATCTCTCCAAGGTCTTGAATCCAAAGTA 118492 >seq236 Length=225512 Score = 127 bits (140), Expect = 2e-24 Identities = 392/594 (66%), Gaps = 17/594 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||| | || | ||| |||||||| || ||||| ||| | || |||||||| ||||| Sbjct 196498 TAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATG 196557 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || ||| || | | | || ||| ||| | ||||||||| Sbjct 196558 AAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTT-ACCGAGAGCGACCAGAAGACG 196616 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| ||| ||||||| || ||| || | ||||||||| | ||| || Sbjct 196617 GTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCA 196676 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 || ||||| ||| | ||| | |||||| || | || || || | | |||| || Sbjct 196677 GGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTG 196736 Query 119447 AAT--AGTTTCTGTCGATG-GTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTC 119503 || | | || | | | ||||| | ||| ||| || | |||||| || Sbjct 196737 GATCAACTGCTTGCTGGGGCGGTTGTT-CAGGTGAGAGAAAAGAAGGCA--GGCAAAGTC 196793 Query 119504 TTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAG--CAAAGTCCAGGCATG 119561 ||||| || ||||| |||||||| ||||| || ||| |||| || ||||| Sbjct 196794 CGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAA--CCGGGCATC 196851 Query 119562 AGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCC 119621 | || | || ||||||||||||| |||| ||||| |||||||| ||||| Sbjct 196852 ATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCA 196911 Query 119622 ACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCACTT 119677 ||| ||| || || | ||||||| ||||||| ||||| |||||| | |||||| Sbjct 196912 ACAGCGGCAAAGGCAACAAGACGCTGAGCAAAA-GTCGACTCCTTGTCAGTAATCCACTT 196970 Query 119678 GAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTG 119737 || ||||||| |||||| || |||||||| | ||| | ||||| | ||| || | Sbjct 196971 CAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTA 197030 Query 119738 CTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 | | |||| |||||||| || | || || || |||||||||||| Sbjct 197031 TGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTC 197084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972701734400