Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq191 152 1e-31 seq438 136 9e-27 >seq191 Length=257482 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || ||||| ||||| |||| || || | ||||| || Sbjct 143425 ACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCA 143484 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || |||||||| || |||||||| || |||||||| || ||||| ||| Sbjct 143485 AGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 143544 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || || || || || || | ||||| Sbjct 143545 ATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTG 143604 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 143605 CCAGTCAGAGTCTTGACAAAGATCTGCAT 143633 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| || | || || | || || || Sbjct 142968 AACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTC 143027 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || |||||||| || || ||||| || |||||||| || ||||| || Sbjct 143028 CAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 143087 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || ||||| || ||| || || ||||| || | ||||| Sbjct 143088 GATCTTGCTCTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTT 143147 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | ||||| Sbjct 143148 GCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| |||||||| || || || ||||| || | ||||| | ||||| || Sbjct 143196 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCCTC 143255 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| ||||| || || || || ||||| || || || || || ||||| || Sbjct 143256 AAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 143315 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || || || || ||||| || || |||||||||| ||||| Sbjct 143316 GATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACCTCAAGGGTAATGGTCTT 143375 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 143376 GCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || |||||||||| || || | ||||| || Sbjct 143653 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCA 143712 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| || ||||| || || ||||| || Sbjct 143713 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 143772 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || |||||||| || || || || || ||||| | ||||| Sbjct 143773 ATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 143832 Query 195112 CCTGT 195116 || || Sbjct 143833 CCGGT 143837 >seq438 Length=409217 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | ||||| || Sbjct 73267 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 73326 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || ||||| || || ||||| || Sbjct 73327 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 73386 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||||||| || || || ||||| | ||||| Sbjct 73387 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTA 73446 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || ||||| Sbjct 73447 CCCGTCAGGGTCTTGACGAA 73466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475231575616