Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq405 113 5e-20 >seq405 Length=464752 Score = 113 bits (124), Expect = 5e-20 Identities = 439/684 (64%), Gaps = 12/684 (2%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||||||||| || || || || | |||| ||||| || || || || ||||| | | Sbjct 119163 CTCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCACATGAGGGT 119104 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | || | || | |||| || | ||| || ||||| || || | || Sbjct 119103 CCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAA 119044 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 ||||| | | | | || || || || ||| | || ||||| || || | Sbjct 119043 CAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAA 118984 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | |||||| ||||| || || | || || || | |||| || || || ||||| || Sbjct 118983 CACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACC 118924 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | || | ||||| ||||| | || | | ||| || ||||| || || || Sbjct 118923 CTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGA 118864 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT--TACTAATTGAAATA 48482 |||| ||||| || | ||| || ||| |||| | ||| | |||| | Sbjct 118863 GGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGA-- 118806 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| ||||| || || || | |||||| || ||||||||||| || ||| Sbjct 118805 CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCT 118746 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || ||||| || || |||| | || | || || ||| | || || ||| || Sbjct 118745 TCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTA 118686 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA-TTTCTCTGATAACAATTTATA 48661 || | || || | || ||||| || ||| | || | || ||| || | | || || Sbjct 118685 CCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTC-GACATGAGGTTGTA 118627 Query 48662 TGTTTCAATAACAGAATCTA---TATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | |||| || | |||| | | ||||| | || |||||||| | Sbjct 118626 AGTTTCCAGAACACGCTCAACATTATCACCCCAA---ATACCGACAGCAACACGCATAAT 118570 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| | || ||||| ||| || | || | ||| || ||| | ||||| Sbjct 118569 CATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTCTCCAA 118510 Query 48779 TGTTTTAAAACCAAAATAGTTGTA 48802 || || || ||||| || | ||| Sbjct 118509 GGTCTTGAATCCAAAGTACTGGTA 118486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105652190720