Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq405 248 2e-60 seq236 165 2e-35 >seq405 Length=464752 Score = 248 bits (274), Expect = 2e-60 Identities = 896/1387 (65%), Gaps = 35/1387 (3%) Strand=Plus/Minus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| ||||| | | ||| | | |||||||| |||||||||||| Sbjct 119979 AGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTTGAAGTGTA 119920 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||||||||| | ||| ||| ||||||||||| || Sbjct 119919 AGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGAGGCAGTGGGCATGGGCGC 119860 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCC---A 213082 ||| || || ||| | || |||| || ||| | |||| | | Sbjct 119859 CACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTG---------CTCTTTCAGAGA 119809 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 || ||| | ||| |||||| | | || | ||||||||| ||||| | ||| || Sbjct 119808 GTTCCAA-TCCCA--CAGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACC 119752 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | | || || ||||| ||| | ||||| || || | | ||| | ||||| Sbjct 119751 CTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGGCGATGTCGCA 119692 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || || | ||||||||||| ||| ||||| ||||| |||| | ||||||||| || Sbjct 119691 TGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAGC 119632 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 ||| | ||| || ||||| | | |||| |||| ||||| |||||||| || Sbjct 119631 CTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACC 119572 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 | || ||||| | ||| | || ||| || | ||| | | ||||| ||| Sbjct 119571 AACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTT 119512 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 || ||||| ||| | ||||||| | || |||||||||| | ||| | || Sbjct 119511 CACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTG 119452 Query 213443 GTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 | | | | || | || | ||| | |||| || |||| |||| ||| Sbjct 119451 GAAGTCGTAGCAGTTGTTGGTGTAGTCAACATAGGCAGGGAGAGCGACCGACGCCAAGTT 119392 Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 ||| || || ||||| | || | |||||| || ||||| ||||| |||||| | Sbjct 119391 GCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACT 119332 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGA-ATCCTTGTAGAGC 213620 || ||||| |||||||||| ||||| ||| ||||| | |||| ||||||||| | | Sbjct 119331 GCGAATGGTTCCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGTGATCCTTGTACAAC 119274 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||| | ||| || ||||| ||| | |||| || ||| || | | ||| Sbjct 119273 ATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCC 119214 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAA 213739 |||| | ||| || || | | | |||||||| |||||| | | || Sbjct 119213 TTGATG----GTAAGACGGCCACGTCCTTCCCGCTCGTACTTGATGTAGAGAGCCTCAAA 119158 Query 213740 TTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 ||| | || || | | | || || || || ||| ||||||||| |||| | Sbjct 119157 TTCCTCACCGTAGCAATCAGCTAAG-CCAGGGCACTCGTTGGGGCACATGAGGGTCCATT 119099 Query 213799 CCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 | |||| | |||| || | || |||||||| || |||| |||||| || ||||| Sbjct 119098 CGCCGTTCTTCTCA-ACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAA 119040 Query 213858 TCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATG 213917 || | || | |||| ||| || ||| || || || || || || ||||| | Sbjct 119039 TCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACA 118980 Query 213918 TCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGG 213974 || |||||||||||||||| ||| |||||||| || || || | |||| || ||||| Sbjct 118979 TCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGA 118920 Query 213975 TCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT 214034 || || | || ||||||||| ||||| | || || | ||||| || Sbjct 118919 TCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGAGGTA 118860 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCCCTA 214092 |||||||| || || || || || || | || | | | || | | |||| || | Sbjct 118859 CCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGA--CCGA 118802 Query 214093 TGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCA 214152 | ||||| || |||||||||||| || ||| | | | || || ||| || | | Sbjct 118801 TACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGA 118742 Query 214153 TGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAG 214212 | ||||| || | | || | |||||||||| || ||||| ||| | | || | Sbjct 118741 TACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGG 118682 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCT 214272 |||||| || || || ||| || | | |||||| | || | ||| |||| || | Sbjct 118681 CGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGTTT 118622 Query 214273 CCAGGAC 214279 |||| || Sbjct 118621 CCAGAAC 118615 >seq236 Length=225512 Score = 165 bits (182), Expect = 2e-35 Identities = 482/735 (66%), Gaps = 17/735 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 196495 TGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCC 196554 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 |||||| ||||||||||| | || |||||| |||| || | |||| || Sbjct 196555 ATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCT-TGTCGTTACCGAGAGCGACCAGAAG 196613 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || |||||| |||||||||| || ||||||| ||||| || | || | Sbjct 196614 ACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGC 196673 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| | ||||| || || ||||||||||| || ||||| || | || | Sbjct 196674 GCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTC 196733 Query 48079 CTT----AAC-GCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| || | ||| || | ||||| |||||| | | || | ||| Sbjct 196734 CTGGATCAACTGCTTG---CTGGGGCGGTTGTT---CAGGTGAGAGAAA---AGAAGGCA 196784 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||||||| |||| | || || || || ||| ||| |||||||||| | ||| Sbjct 196785 GGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACC 196844 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || ||||| || || | || |||| |||||||||||||| Sbjct 196845 GGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGAT 196904 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || || || || || | || | |||| | | |||||| | || Sbjct 196905 ACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAAT 196964 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || |||||||| ||||| ||||| || || || || ||||| ||| Sbjct 196965 CCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAA 197024 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 ||| | ||| || | | | ||| || ||||| || |||| | ||| |||| Sbjct 197025 GAGGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTC 197084 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||| ||||| ||| | ||| || | ||| Sbjct 197085 CGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTG 197144 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | ||||| | ||| | || ||||| ||||| || || || || || || || Sbjct 197145 GACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAA 197204 Query 48553 GAAGGCAAGGACATG 48567 ||||||||| || || Sbjct 197205 GAAGGCAAGAACGTG 197219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527583416320