Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq405 201 2e-46 seq236 143 5e-29 >seq405 Length=464752 Score = 201 bits (222), Expect = 2e-46 Identities = 999/1581 (63%), Gaps = 60/1581 (4%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | | ||| | | |||||| | ||| |||||| | || Sbjct 119976 GTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTTGAAGTGTAAGG 119917 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||| ||||| ||||| | || ||| ||||||||||| ||||| Sbjct 119916 CTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGAGGCAGTGGGCATGGGCGCCAC 119857 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTA-TTGATGGACTTTCTCAGCGTGTTCCAGTCAC 221294 ||||| |||||| | ||| ||| ||||| || | |||| | |||||| || | Sbjct 119856 AAGCAGCGAGTTGCGAACACCGT-TCTGCTTGATCTGCTCTTTCAGAGAGTTCCAATCCC 119798 Query 221295 AGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAG 221354 | |||||| | | Sbjct 119797 A---------CAGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCCTGGG 119747 Query 221355 ACACCGGACTCCCATCGTACGACTCGTAGGGACCGT--ACAGTTCGGCCTGGGCGCAAGA 221412 | || ||| || ||||| | | ||| ||||| | |||| |||| | |||| || Sbjct 119746 AGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAG--CGGCGATGTCGCATGA 119689 Query 221413 CTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCC 221470 || || |||||||||||||| ||||||||||||||| ||||||||| || | ||| Sbjct 119688 A-GCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG-CTGACGAGCC 119631 Query 221471 TCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCG 221530 |||| ||| || ||||| || || | | ||| | |||||||| ||||| || || Sbjct 119630 TCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCA 119571 Query 221531 ATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588 | ||| ||||| | ||| | | ||||| | ||| || || || || || || Sbjct 119570 ACACCAATGGGACGGTGACGCATGTTGCTGTTCCGG--GCCTCGACAACAGGGTAGTGGT 119513 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 | || || || | | ||| | ||| | | || || || ||| |||||||| Sbjct 119512 TCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCT 119453 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 || || ||| || || || | | || ||| | || || || | Sbjct 119452 GG------------AAGTCGTAGCAGTTGTTGGTGTAGTCAACATAGGCAGGGAGAGCGA 119405 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | |||| ||| ||||| || ||||| || | |||| || ||||| || | Sbjct 119404 CCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGC 119345 Query 221769 AGAGGTTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 | |||||| | ||| ||||| ||||||| || || ||| |||||| ||| ||| Sbjct 119344 AAAGGTTG--GAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTG-CAGT 119288 Query 221827 G-TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 | |||||||| | ||| || || |||||||| |||||| ||||||| | || Sbjct 119287 GATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATACC 119228 Query 221886 AGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGT 221943 | || | |||| || | | || ||| || | || || || ||| | | Sbjct 119227 ACAGCT-TCTGAGCCTTGATGGTAA----GACGGCCACGTCCTTCCCGCTCGTACTTGAT 119173 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||||| ||||| | |||||||| || | | ||| || ||| | ||| || Sbjct 119172 GTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCA 119113 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || |||| | ||| | | || | || |||||| | || ||||||||||| Sbjct 119112 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 119053 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | || | ||| | || || ||||||| |||| ||| |||| || || | Sbjct 119052 GGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAG 118993 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 |||||||| | |||||||||||||||||||| || | ||| | ||| || || ||||| Sbjct 118992 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 118933 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242 ||| ||||||||||| | | | ||| | |||||||| || || | || || | Sbjct 118932 GTTACCACCCTGATCGA-CGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAA 118874 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--- 222299 ||||| || |||||||||||| |||||| | ||| || | || ||| Sbjct 118873 TGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCAC---GGATACGGT 118817 Query 222300 TGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 ||| | ||||||||||| || || |||||||| || ||| ||||||| || | Sbjct 118816 GGGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTAT 118757 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||| || || ||| ||| ||||| | || | || || || || || | ||||| Sbjct 118756 CATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAG 118697 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | | || || |||||| || || || ||| |||||| || ||| | || |||| Sbjct 118696 GCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACA 118637 Query 222480 TCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATC 222539 | || | ||| || || | || | | | || || || ||| | || | Sbjct 118636 TGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAAATACCGACAGCAACAC 118577 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| ||| || | ||| ||| || | |||| |||| ||||| || Sbjct 118576 GCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGA--AGGTAAGA 118519 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | | |||| |||||||| |||||||| | | || ||||| | | | | || | ||| Sbjct 118518 TCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGCGGTCATATACAATGGC 118459 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||||||||| |||||| Sbjct 118458 CGAGTCCAGCTCTTCCTTGTG 118438 >seq236 Length=225512 Score = 143 bits (158), Expect = 5e-29 Identities = 384/573 (67%), Gaps = 17/573 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | |||||||||||||| | ||| |||||||||||| ||||||||| Sbjct 197342 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAT 197283 Query 25534 CTGGCCAAGGACATGGACGGCTGG--TACGCTC-TATCCAAAGACGAGCAGCATTTTCTC 25590 || | ||||| | ||| |||| || | | | | || || |||||| || || Sbjct 197282 CTTTCTAAGGATCTTCACGACTGGAATAACCGCATGACTAAGGATGAGCAGTTCTTCATC 197223 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 |||| | || ||||| || |||||||| ||||| || |||||||| || |||| Sbjct 197222 TCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGTCGAG 197163 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | || || ||| | || ||| || || |||||||||||||| Sbjct 197162 CGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGATCATG 197103 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || || || | ||||| ||| || | ||| | || ||||||| || Sbjct 197102 ATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTACATTAAGGAGCCT 197043 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGG 25828 || || | | || || || ||||| || ||| || ||| |||| | |||| Sbjct 197042 GCTCAGCGCACATAC-CTCTTCAACGCCATTGA-CACTATTCCCTGCATTCGCCGCAAGG 196985 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| |||||||||| | | | || | | | || |||| |||| || || Sbjct 196984 CCGACTGGGCCCTGAAGTGGATTA-CTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTT 196926 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 |||||||| ||||| ||||| ||||| ||| ||| | ||||| ||||||| ||||| Sbjct 196925 GCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTTTGGCT- 196867 Query 25948 AAGCAGAAG---GGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 || ||| || | |||||||| || ||||| ||||||||||| ||| | || Sbjct 196866 --GCGCAAGCGTGGTATGATGCCCGGTTTG-ACTTTCTCCAACGAGCTTATCTCTCGTGA 196810 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| |||| || ||||||||||| || Sbjct 196809 TGAGGGTCTTCACACGGACTTTGCCTGCCTTCT 196777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839598469120