Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq405 167 7e-36 seq236 127 6e-24 seq427 123 7e-23 seq8 104 7e-17 seq446 89.7 2e-12 >seq405 Length=464752 Score = 167 bits (184), Expect = 7e-36 Identities = 554/854 (65%), Gaps = 17/854 (2%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||||| ||| ||||| ||||| ||||| || | ||||||| Sbjct 119368 CGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCT 119309 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | ||| || ||||||||| | ||| | ||| | || ||||| ||| Sbjct 119308 GGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCT 119249 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || |||||||| ||| || | | || || || | | |||| Sbjct 119248 GAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTT 119189 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCA-CTCAGTCCA 155864 || ||| || || || || || | | ||||||||||| |||||| || || ||| Sbjct 119188 CCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAG-CCA 119130 Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCA 155919 ||||||| | |||||| | || | ||| || || || | | |||||| || Sbjct 119129 GGGCACTCGTTGGGGCACATGAGGGTCCA--TTCGCCGTTCTTCTCAA---CACGCTTCA 119075 Query 155920 TAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGC 155979 | || | ||| ||| | ||| ||| | || | || |||||| | | Sbjct 119074 TGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTAC 119015 Query 155980 CGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACA 156039 |||| |||||||| || || | ||| || | ||||| || |||||||| || | Sbjct 119014 CGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAA 118955 Query 156040 TAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGA 156096 | |||||| |||| | |||| ||||||||||| || || |||||||| || |||| Sbjct 118954 TGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGA 118895 Query 156097 AGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC 156156 |||||| |||||||||| ||| || || || || || ||||| ||| ||| | |||| Sbjct 118894 AGACACGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAAC 118835 Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215 ||| | || | | || | || || |||||||| | |||| || || || | Sbjct 118834 CAGTAGCACGGATACGGTGGGCGTTGAGACCGATACCACCCG-CCATCTTGGAGATCATA 118776 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || || ||| | |||| | |||||||| ||| || || | ||| || | Sbjct 118775 GCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAG 118716 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 |||| ||| | ||||| | || || || |||||||| || ||||| | || ||| Sbjct 118715 AAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGA 118656 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCG 156395 | || |||| | ||||| | ||| || ||| || ||||| |||| || Sbjct 118655 GTGAAGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCC 118596 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 ||||| || || || | ||| ||| |||||||||||||| |||||| |||||| Sbjct 118595 CAAATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCA 118536 Query 156456 ATTCGCAGAAGGTA 156469 | |||||||| Sbjct 118535 AGCTTGAGAAGGTA 118522 >seq236 Length=225512 Score = 127 bits (140), Expect = 6e-24 Identities = 242/354 (68%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 ||||||||||| |||||| || | ||||| |||||| || || || || || | Sbjct 197137 CCGAAGCCCGTTGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACCT 197078 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | ||| || || || || ||||| || || | | ||| ||||| || | |||||| Sbjct 197077 ACTCTTTGCTGATCGACACCTACATTAAGGAGCCTGCTCAGC-GCACATACCTCTTCAAC 197019 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 |||||| | |||| || ||| || | |||||||| | || ||||| Sbjct 197018 GCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACT 196959 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| ||| ||||||| ||||| ||||| ||||| | || ||||| || || Sbjct 196958 GACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTC 196899 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| |||||| || ||| || |||||||| ||||||||||| | || || || Sbjct 196898 TTCTCTGGTGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTG 196839 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||| || ||||| ||||| || | || |||| |||||||| || |||||| Sbjct 196838 ACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCC 196785 >seq427 Length=422280 Score = 123 bits (136), Expect = 7e-23 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| |||||||| ||||| ||||| || | || || || || || || || || Sbjct 341631 CTTGACCAAACGACGTTGAATGTAACCTGTCTCGGCAGTCTTGACGGCAGTGTCGATAAG 341572 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| |||||||| |||| || |||||||| | ||| | || || || || | | | Sbjct 341571 ACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCA-CTGGGAGTGAGACCACGGAGAT 341513 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||||||||||||||| | |||||| || | ||| |||||| || || || | Sbjct 341512 AAGAGTTCTCAACGAAACCACGAGACTCGGGTGAGTAATCGTCCTTGGTGAAATGAGGGA 341453 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | || || ||||| | ||||||||||| || ||||| | || || || | Sbjct 341452 GAGTGCGGTACTTGAAGCCGAAAGGGATACGCTTACCCTCAACAATTTGTTGACCGACTA 341393 Query 302822 ACGAAATCATCTGCGAAATATT 302843 || | ||||||| ||||| || Sbjct 341392 GCGCAGTCATCTGAGAAATGTT 341371 Score = 87.8 bits (96), Expect = 5e-12 Identities = 106/141 (75%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| |||||| |||||| | || ||||| ||||| |||||||| Sbjct 342425 AGAATTTCCTTCAA-ACGGGGGACACCAAGAGTAACGTTCTTACTGGAC---ACACCAGC 342370 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| |||||||| ||||| || | || |||| ||||||||||| || || || | Sbjct 342369 AAAATGGAAAGTGTTCAGTGTCATCTGGGTAGCAGGCTCACCAATGGACTGAGCAGCCAA 342310 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| || || || Sbjct 342309 CACACCAACCATCTCACCGGG 342289 >seq8 Length=73315 Score = 104 bits (114), Expect = 7e-17 Identities = 126/168 (75%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| ||||||| | ||||| ||||||||| ||||||||||| | ||| |||| Sbjct 51067 GAAGCTGAGAGGCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCTAGACGGAGAC 51008 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA-TAGGACCGATG 251592 |||| ||||||| | ||| || | |||||||| || | | | || ||||||| || Sbjct 51007 CACCCTCGCGAGAACGACCTTCTGTTGGCTGACGGGTCA-ACGAGGCACGAGGACCGGTG 50949 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || || ||||| | ||||| ||||||||||| |||||| Sbjct 50948 GACCGAGAGTGCATTTTATCTTGGACCATGTGCTTGAGACGTTGGTAG 50901 >seq446 Length=87972 Score = 89.7 bits (98), Expect = 2e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 ||||| ||| ||| ||||| || ||||||||| ||||| || ||||| || ||| Sbjct 32076 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATG 32135 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTT 251939 ||||| || || | | || ||| ||| || ||||| |||| || || ||| || Sbjct 32136 ATGATATCTGGAGTGATACCCTCACGAGTAAAAGGCATGTCCTCTTG-TCTGTAAGTGAC 32194 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||||| ||||||||||| ||| ||||| |||||||| Sbjct 32195 ACCAATGGTACCCTTCTGTCCGTGACGGGAAGCAAACTTGTCACCAAT 32242 Score = 86.0 bits (94), Expect = 2e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328 ||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| Sbjct 31739 AGCACCGTGGGCAATCATACAATCACGTTCCATCTCACCGAAACGCAGACCACCATC 31795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809151766976