Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq405 167 7e-36
seq236 127 6e-24
seq427 123 7e-23
seq8 104 7e-17
seq446 89.7 2e-12
>seq405
Length=464752
Score = 167 bits (184), Expect = 7e-36
Identities = 554/854 (65%), Gaps = 17/854 (2%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | ||||||| ||| ||||| ||||| ||||| || | |||||||
Sbjct 119368 CGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCT 119309
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
||||| || | ||| || ||||||||| | ||| | ||| | || ||||| |||
Sbjct 119308 GGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCT 119249
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || |||||||| ||| || | | || || || | | ||||
Sbjct 119248 GAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTT 119189
Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCA-CTCAGTCCA 155864
|| ||| || || || || || | | ||||||||||| |||||| || || |||
Sbjct 119188 CCCGCTCGTACTTGATGTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAG-CCA 119130
Query 155865 GGGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCA 155919
||||||| | |||||| | || | ||| || || || | | |||||| ||
Sbjct 119129 GGGCACTCGTTGGGGCACATGAGGGTCCA--TTCGCCGTTCTTCTCAA---CACGCTTCA 119075
Query 155920 TAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGC 155979
| || | ||| ||| | ||| ||| | || | || |||||| | |
Sbjct 119074 TGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTAC 119015
Query 155980 CGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACA 156039
|||| |||||||| || || | ||| || | ||||| || |||||||| || |
Sbjct 119014 CGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAA 118955
Query 156040 TAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGA 156096
| |||||| |||| | |||| ||||||||||| || || |||||||| || ||||
Sbjct 118954 TGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGA 118895
Query 156097 AGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAAC 156156
|||||| |||||||||| ||| || || || || || ||||| ||| ||| | ||||
Sbjct 118894 AGACACGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAAC 118835
Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215
||| | || | | || | || || |||||||| | |||| || || || |
Sbjct 118834 CAGTAGCACGGATACGGTGGGCGTTGAGACCGATACCACCCG-CCATCTTGGAGATCATA 118776
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||| | |||| | |||||||| ||| || || | ||| || |
Sbjct 118775 GCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAG 118716
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
|||| ||| | ||||| | || || || |||||||| || ||||| | || |||
Sbjct 118715 AAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGA 118656
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCG 156395
| || |||| | ||||| | ||| || ||| || ||||| |||| ||
Sbjct 118655 GTGAAGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCC 118596
Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455
||||| || || || | ||| ||| |||||||||||||| |||||| ||||||
Sbjct 118595 CAAATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCA 118536
Query 156456 ATTCGCAGAAGGTA 156469
| ||||||||
Sbjct 118535 AGCTTGAGAAGGTA 118522
>seq236
Length=225512
Score = 127 bits (140), Expect = 6e-24
Identities = 242/354 (68%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
||||||||||| |||||| || | ||||| |||||| || || || || || |
Sbjct 197137 CCGAAGCCCGTTGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACCT 197078
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423
| ||| || || || || ||||| || || | | ||| ||||| || | ||||||
Sbjct 197077 ACTCTTTGCTGATCGACACCTACATTAAGGAGCCTGCTCAGC-GCACATACCTCTTCAAC 197019
Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
|||||| | |||| || ||| || | |||||||| | || |||||
Sbjct 197018 GCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACT 196959
Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543
|||||| ||| ||||||| ||||| ||||| ||||| | || ||||| || ||
Sbjct 196958 GACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTC 196899
Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603
||| |||||| || ||| || |||||||| ||||||||||| | || || ||
Sbjct 196898 TTCTCTGGTGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTG 196839
Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
||| || ||||| ||||| || | || |||| |||||||| || ||||||
Sbjct 196838 ACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCC 196785
>seq427
Length=422280
Score = 123 bits (136), Expect = 7e-23
Identities = 186/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| |||||||| ||||| ||||| || | || || || || || || || ||
Sbjct 341631 CTTGACCAAACGACGTTGAATGTAACCTGTCTCGGCAGTCTTGACGGCAGTGTCGATAAG 341572
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| |||||||| |||| || |||||||| | ||| | || || || || | | |
Sbjct 341571 ACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCA-CTGGGAGTGAGACCACGGAGAT 341513
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||||||||||||||| | |||||| || | ||| |||||| || || || |
Sbjct 341512 AAGAGTTCTCAACGAAACCACGAGACTCGGGTGAGTAATCGTCCTTGGTGAAATGAGGGA 341453
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | || || ||||| | ||||||||||| || ||||| | || || || |
Sbjct 341452 GAGTGCGGTACTTGAAGCCGAAAGGGATACGCTTACCCTCAACAATTTGTTGACCGACTA 341393
Query 302822 ACGAAATCATCTGCGAAATATT 302843
|| | ||||||| ||||| ||
Sbjct 341392 GCGCAGTCATCTGAGAAATGTT 341371
Score = 87.8 bits (96), Expect = 5e-12
Identities = 106/141 (75%), Gaps = 5/141 (4%)
Strand=Plus/Minus
Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
|||||||| ||||| |||||| |||||| | || ||||| ||||| ||||||||
Sbjct 342425 AGAATTTCCTTCAA-ACGGGGGACACCAAGAGTAACGTTCTTACTGGAC---ACACCAGC 342370
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||| |||||||| ||||| || | || |||| ||||||||||| || || || |
Sbjct 342369 AAAATGGAAAGTGTTCAGTGTCATCTGGGTAGCAGGCTCACCAATGGACTGAGCAGCCAA 342310
Query 301932 CATACCAACCATTTCTCCTGG 301952
|| ||||||||| || || ||
Sbjct 342309 CACACCAACCATCTCACCGGG 342289
>seq8
Length=73315
Score = 104 bits (114), Expect = 7e-17
Identities = 126/168 (75%), Gaps = 3/168 (2%)
Strand=Plus/Minus
Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533
||||| |||| ||||||| | ||||| ||||||||| ||||||||||| | ||| ||||
Sbjct 51067 GAAGCTGAGAGGCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCTAGACGGAGAC 51008
Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA-TAGGACCGATG 251592
|||| ||||||| | ||| || | |||||||| || | | | || ||||||| ||
Sbjct 51007 CACCCTCGCGAGAACGACCTTCTGTTGGCTGACGGGTCA-ACGAGGCACGAGGACCGGTG 50949
Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|| || || ||||| | ||||| ||||||||||| ||||||
Sbjct 50948 GACCGAGAGTGCATTTTATCTTGGACCATGTGCTTGAGACGTTGGTAG 50901
>seq446
Length=87972
Score = 89.7 bits (98), Expect = 2e-12
Identities = 122/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880
||||| ||| ||| ||||| || ||||||||| ||||| || ||||| || |||
Sbjct 32076 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATG 32135
Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTT 251939
||||| || || | | || ||| ||| || ||||| |||| || || ||| ||
Sbjct 32136 ATGATATCTGGAGTGATACCCTCACGAGTAAAAGGCATGTCCTCTTG-TCTGTAAGTGAC 32194
Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| || ||||| ||||||||||| ||| ||||| ||||||||
Sbjct 32195 ACCAATGGTACCCTTCTGTCCGTGACGGGAAGCAAACTTGTCACCAAT 32242
Score = 86.0 bits (94), Expect = 2e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328
||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 31739 AGCACCGTGGGCAATCATACAATCACGTTCCATCTCACCGAAACGCAGACCACCATC 31795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471809151766976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |