Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq427 129 7e-24 seq130 129 7e-24 seq405 123 3e-22 seq236 116 5e-20 >seq427 Length=422280 Score = 129 bits (142), Expect = 7e-24 Identities = 266/396 (67%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||| ||||| || ||| || ||||||||| || || || | Sbjct 392132 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAAAACGCCCCTCCCGG 392073 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | || |||| ||||| |||||||| ||| | || || || || ||||| Sbjct 392072 TCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTCACCCGTCGTCGCCCCGGCCAATC 392013 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| | |||| || ||||| ||| || ||||||| ||||| || || || ||| Sbjct 392012 CGCCATCACCACCCCCCGCAATGAGAAGGACCGCGTCACCATCCTCTCCGGTACCGAGTT 391953 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| || || ||| | || | | ||| || ||||| |||||||| ||| Sbjct 391952 CGGCCGGACCCTGGGCACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 391893 Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386 ||||| | ||| | || || | || || || || |||||||| | ||| || Sbjct 391892 GGACTACGGCAACAAGACCATGGACCGCTTCCCCCGCCCATCGCACGCCGATTTCACTTA 391833 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | || ||||||||||||||||| || || || || || || || || ||||| ||||| Sbjct 391832 CCAGGAGAAGTACGGCATCAAGGCTTCTTCCGGTGGTGGTCGTTCCTCCGCCCGTGAGAC 391773 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | || ||||||||||| || || |||||||| Sbjct 391772 CATTGCCCGTGTCGCCGCCGGTGCCGTTGCCGAGAA 391737 >seq130 Length=271377 Score = 129 bits (142), Expect = 7e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| || ||||||||||| || ||||| |||| |||||| | || |||||||||| Sbjct 73071 CCAACTATCTGGACATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGA 73012 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 73011 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 72968 >seq405 Length=464752 Score = 123 bits (136), Expect = 3e-22 Identities = 215/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || |||| ||| ||||| || ||||| || || | |||||| || Sbjct 118923 CTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGA 118864 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||||| || | || || | ||| ||| | || Sbjct 118863 GGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGACC 118804 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || ||||| || || Sbjct 118803 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 118744 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | ||||| || || || || || | || || Sbjct 118743 GATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 118684 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| || || | || ||||| |||| | ||||||| || ||| || Sbjct 118683 GGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 118624 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 118623 TTCCAGAACACGC 118611 >seq236 Length=225512 Score = 116 bits (128), Expect = 5e-20 Identities = 220/321 (69%), Gaps = 11/321 (3%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| || ||||||||| ||||||||| | | || | | | Sbjct 197084 CCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCT 197143 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||||||| ||| || || ||| ||||||| || || ||||| |||||||| Sbjct 197144 GGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGA 197203 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGT 869807 | || || || ||||| ||| ||| |||| || | | | ||| ||||| Sbjct 197204 AGAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGT 197263 Query 869808 GGACGGTGTCGGCGCTGAGG----TCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCC 869863 | || | || || || | ||||||||||||||||| |||||||||||| Sbjct 197264 CG----TGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCC 197319 Query 869864 TTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGG 869923 || |||||||| | ||| | | ||||| |||||||||||| || |||||||||||| Sbjct 197320 TTCTTGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGG 197379 Query 869924 TTGTCGCGCAACAGGGGTTCG 869944 || || | | ||||||||| Sbjct 197380 TTATCCTGAAGGAGGGGTTCG 197400 Score = 105 bits (116), Expect = 8e-17 Identities = 176/250 (70%), Gaps = 11/250 (4%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || ||||| ||||||||||||| | ||| || ||||| ||| Sbjct 196843 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAG 196902 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| || ||||||||| | | || |||| ||||| ||||| ||||||| Sbjct 196903 ATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAA--AGTCGA----CTCCTTG 196956 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 | | |||||||||| |||||||||||||| | | | || | ||||| ||| Sbjct 196957 TCAGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATG 197016 Query 869396 GCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGA 869454 ||| ||||||| || | | || || ||||| | |||||||||||||| | || Sbjct 197017 GCGTTGAAGAGGTATGTGC-GCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA 197075 Query 869455 ATAGGTCTCC 869464 ||||||||| Sbjct 197076 GTAGGTCTCC 197085 Score = 100 bits (110), Expect = 3e-15 Identities = 173/250 (69%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||||||||| || | || ||||| Sbjct 196489 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATG 196548 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | | Sbjct 196549 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACC 196608 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| ||||||||||| ||||||| | || ||||| |||| Sbjct 196609 AGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGA 196668 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| ||||| || ||||||| || |||| Sbjct 196669 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATG 196728 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 196729 ATGT-CCTGG 196737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107102435022016