Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq427 129 7e-24
seq130 129 7e-24
seq405 123 3e-22
seq236 116 5e-20
>seq427
Length=422280
Score = 129 bits (142), Expect = 7e-24
Identities = 266/396 (67%), Gaps = 6/396 (2%)
Strand=Plus/Minus
Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152
|| ||| || ||||| ||||| || ||| || ||||||||| || || || |
Sbjct 392132 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAAAACGCCCCTCCCGG 392073
Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212
| || |||| ||||| |||||||| ||| | || || || || |||||
Sbjct 392072 TCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTCACCCGTCGTCGCCCCGGCCAATC 392013
Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272
||| | |||| || ||||| ||| || ||||||| ||||| || || || |||
Sbjct 392012 CGCCATCACCACCCCCCGCAATGAGAAGGACCGCGTCACCATCCTCTCCGGTACCGAGTT 391953
Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332
||||| || || ||| | || | | ||| || ||||| |||||||| |||
Sbjct 391952 CGGCCGGACCCTGGGCACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 391893
Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386
||||| | ||| | || || | || || || || |||||||| | ||| ||
Sbjct 391892 GGACTACGGCAACAAGACCATGGACCGCTTCCCCCGCCCATCGCACGCCGATTTCACTTA 391833
Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446
| || ||||||||||||||||| || || || || || || || || ||||| |||||
Sbjct 391832 CCAGGAGAAGTACGGCATCAAGGCTTCTTCCGGTGGTGGTCGTTCCTCCGCCCGTGAGAC 391773
Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
| | || ||||||||||| || || ||||||||
Sbjct 391772 CATTGCCCGTGTCGCCGCCGGTGCCGTTGCCGAGAA 391737
>seq130
Length=271377
Score = 129 bits (142), Expect = 7e-24
Identities = 91/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||| || ||||||||||| || ||||| |||| |||||| | || ||||||||||
Sbjct 73071 CCAACTATCTGGACATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGA 73012
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 73011 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 72968
>seq405
Length=464752
Score = 123 bits (136), Expect = 3e-22
Identities = 215/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| |||||||| || || |||| ||| ||||| || ||||| || || | |||||| ||
Sbjct 118923 CTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGA 118864
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||||| || | || || | ||| ||| | ||
Sbjct 118863 GGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGACC 118804
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | || || ||||| || || ||||| || ||
Sbjct 118803 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 118744
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || | ||||| || || || || || | || ||
Sbjct 118743 GATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 118684
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||||||| || || | || ||||| |||| | ||||||| || ||| ||
Sbjct 118683 GGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 118624
Query 1630365 GGCGAGCACGCGC 1630377
| || || |||
Sbjct 118623 TTCCAGAACACGC 118611
>seq236
Length=225512
Score = 116 bits (128), Expect = 5e-20
Identities = 220/321 (69%), Gaps = 11/321 (3%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||| |||||||| || ||||||||| ||||||||| | | || | | |
Sbjct 197084 CCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCT 197143
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
||||||| ||| || || ||| ||||||| || || ||||| ||||||||
Sbjct 197144 GGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGA 197203
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGT 869807
| || || || ||||| ||| ||| |||| || | | | ||| |||||
Sbjct 197204 AGAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGT 197263
Query 869808 GGACGGTGTCGGCGCTGAGG----TCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCC 869863
| || | || || || | ||||||||||||||||| ||||||||||||
Sbjct 197264 CG----TGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCC 197319
Query 869864 TTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGG 869923
|| |||||||| | ||| | | ||||| |||||||||||| || ||||||||||||
Sbjct 197320 TTCTTGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGG 197379
Query 869924 TTGTCGCGCAACAGGGGTTCG 869944
|| || | | |||||||||
Sbjct 197380 TTATCCTGAAGGAGGGGTTCG 197400
Score = 105 bits (116), Expect = 8e-17
Identities = 176/250 (70%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|||||||| | || ||||| ||||||||||||| | ||| || ||||| |||
Sbjct 196843 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAG 196902
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||| || ||||||||| | | || |||| ||||| ||||| |||||||
Sbjct 196903 ATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAA--AGTCGA----CTCCTTG 196956
Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395
| | |||||||||| |||||||||||||| | | | || | ||||| |||
Sbjct 196957 TCAGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATG 197016
Query 869396 GCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGA 869454
||| ||||||| || | | || || ||||| | |||||||||||||| | ||
Sbjct 197017 GCGTTGAAGAGGTATGTGC-GCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA 197075
Query 869455 ATAGGTCTCC 869464
|||||||||
Sbjct 197076 GTAGGTCTCC 197085
Score = 100 bits (110), Expect = 3e-15
Identities = 173/250 (69%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||||||||| || | || |||||
Sbjct 196489 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATG 196548
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | |
Sbjct 196549 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACC 196608
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || ||||||||||| ||||||||||| ||||||| | || ||||| ||||
Sbjct 196609 AGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGA 196668
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| | | ||||| ||||| || ||||||| || ||||
Sbjct 196669 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATG 196728
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 196729 ATGT-CCTGG 196737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107102435022016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |