Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq236 134 2e-25 seq130 125 1e-22 seq405 105 1e-16 seq393 91.5 2e-12 >seq236 Length=225512 Score = 134 bits (148), Expect = 2e-25 Identities = 207/291 (71%), Gaps = 11/291 (4%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || ||||| ||||||||||||| ||| || ||||| ||| Sbjct 196843 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAG 196902 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| || ||||||||| | || || |||| |||||||| | | ||| ||| Sbjct 196903 ATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGT--CGA----CTCCTTG 196956 Query 794500 T---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | |||||||||| ||||| || ||||| | | |||| | ||||| ||| Sbjct 196957 TCAGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATG 197016 Query 794557 GCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 ||| ||||||| || | || | || ||||| | |||||||||||| || | || Sbjct 197017 GCGTTGAAGAGGTATGTGCG-CTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA 197075 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||||||| ||||| ||||| || || ||||||||| || |||||||| Sbjct 197076 GTAGGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCA 197126 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| ||||||||||| || | || ||||| |||||| | ||| Sbjct 196507 ACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 196566 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | ||| ||| ||| ||||| | | || || |||||||||||| Sbjct 196567 GGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGAAGACGGTCGGCGACG 196626 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGAC 794096 || || ||||| ||||||| | || ||||| |||| || || ||| || | | Sbjct 196627 AACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCAGGGAAGAGCC 196686 Query 794097 TCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||| | | ||||| ||||| || ||||||| || ||||||| | ||||| Sbjct 196687 TCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGT-CCTGG 196737 Score = 95.1 bits (104), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 796297 AGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 || || | ||||||||||||||| || |||||||||||||| |||||||| | ||| ||| Sbjct 197281 AGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATC 197340 Query 796357 CGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 ||||| ||| ||||| || || ||||| |||||||| || | || || || ||| Sbjct 197341 TCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATCCTGAAGGAGGGGTTCG 197400 >seq130 Length=271377 Score = 125 bits (138), Expect = 1e-22 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| || |||||||||||||| ||||| | || ||||||||||| |||||| | | Sbjct 73071 CCAACTATCTGGACATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGA 73012 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 |||||||||||||||| ||||| || ||||||||||| |||||| Sbjct 73011 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 72968 >seq405 Length=464752 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || |||| ||| ||||| || ||||| || |||| |||||| || Sbjct 118923 CTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGA 118864 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||||| || | || || | ||| ||| | || Sbjct 118863 GGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGACC 118804 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || || ||||| || || Sbjct 118803 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 118744 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || || | | || || Sbjct 118743 GATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 118684 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||| || || Sbjct 118683 GGCGTTGAAGAGGGTAGG 118666 >seq393 Length=186848 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 144676 GTACTTGGTAACGGCCTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGAAG 144735 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || || | |||||||||||| | || | ||| ||| Sbjct 144736 GATGAGACGGACAGAGGTCTGGATCTCTCTGGAGGAGATGGTG 144778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916198744196672