Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq236 134 2e-25
seq130 125 1e-22
seq405 105 1e-16
seq393 91.5 2e-12
>seq236
Length=225512
Score = 134 bits (148), Expect = 2e-25
Identities = 207/291 (71%), Gaps = 11/291 (4%)
Strand=Plus/Plus
Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439
|||||||| | || ||||| ||||||||||||| ||| || ||||| |||
Sbjct 196843 CCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAG 196902
Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499
|| ||||| || ||||||||| | || || |||| |||||||| | | ||| |||
Sbjct 196903 ATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGT--CGA----CTCCTTG 196956
Query 794500 T---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
| | |||||||||| ||||| || ||||| | | |||| | ||||| |||
Sbjct 196957 TCAGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATG 197016
Query 794557 GCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615
||| ||||||| || | || | || ||||| | |||||||||||| || | ||
Sbjct 197017 GCGTTGAAGAGGTATGTGCG-CTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGA 197075
Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||||||||| ||||| ||||| || || ||||||||| || ||||||||
Sbjct 197076 GTAGGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCA 197126
Score = 95.1 bits (104), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|| ||| |||||| ||||||||||| || | || ||||| |||||| | |||
Sbjct 196507 ACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 196566
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036
||||||| | | ||| ||| ||| ||||| | | || || ||||||||||||
Sbjct 196567 GGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGAAGACGGTCGGCGACG 196626
Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGAC 794096
|| || ||||| ||||||| | || ||||| |||| || || ||| || | |
Sbjct 196627 AACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGCAGGGAAGAGCC 196686
Query 794097 TCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
||| | | ||||| ||||| || ||||||| || ||||||| | |||||
Sbjct 196687 TCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGT-CCTGG 196737
Score = 95.1 bits (104), Expect = 2e-13
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 796297 AGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356
|| || | ||||||||||||||| || |||||||||||||| |||||||| | ||| |||
Sbjct 197281 AGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATC 197340
Query 796357 CGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416
||||| ||| ||||| || || ||||| |||||||| || | || || || |||
Sbjct 197341 TCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATCCTGAAGGAGGGGTTCG 197400
>seq130
Length=271377
Score = 125 bits (138), Expect = 1e-22
Identities = 90/104 (87%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
||||||| || |||||||||||||| ||||| | || ||||||||||| |||||| | |
Sbjct 73071 CCAACTATCTGGACATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGA 73012
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
|||||||||||||||| ||||| || ||||||||||| ||||||
Sbjct 73011 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 72968
>seq405
Length=464752
Score = 105 bits (116), Expect = 1e-16
Identities = 178/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| ||||| || || || |||| ||| ||||| || ||||| || |||| |||||| ||
Sbjct 118923 CTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAACAATGCCGTTCGA 118864
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||||| || | || || | ||| ||| | ||
Sbjct 118863 GGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGGGCGTTGAGACC 118804
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| ||||||||| | || || | || || || || ||||| || ||
Sbjct 118803 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 118744
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || || || | | || ||
Sbjct 118743 GATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 118684
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||| |||||||| || ||
Sbjct 118683 GGCGTTGAAGAGGGTAGG 118666
>seq393
Length=186848
Score = 91.5 bits (100), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| | |
Sbjct 144676 GTACTTGGTAACGGCCTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGAAG 144735
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573
||| || || || | |||||||||||| | || | ||| |||
Sbjct 144736 GATGAGACGGACAGAGGTCTGGATCTCTCTGGAGGAGATGGTG 144778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916198744196672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |