Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq405 199 4e-46 seq191 120 3e-22 seq419 104 2e-17 seq236 104 2e-17 seq438 102 8e-17 >seq405 Length=464752 Score = 199 bits (220), Expect = 4e-46 Identities = 1120/1762 (64%), Gaps = 61/1762 (3%) Strand=Plus/Minus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 || |||||||| ||| ||||| || || ||||||||||| ||||| | || | || Sbjct 120188 TTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTA 120129 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| |||||| | ||||||||| | Sbjct 120128 CGCTGAGAA---ATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCGGGAATGCTG 120072 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 |||| ||| || || ||| || || || || | || ||| | |||| | Sbjct 120071 GGGATGTTCTGAACAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTATCCGACCAC 120012 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 || || || | ||||| | || | | || || ||||| ||||| || || Sbjct 120011 AGACCAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCC 119952 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 | ||| || ||| | || | ||| || | || || || |||||||||| |||| | Sbjct 119951 AACACACGGCGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGA 119892 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| ||| || |||||||||||||| | |||| Sbjct 119891 ATCTGGGAAGTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTC 119832 Query 148404 TTTTTTATTTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTC 148460 | || | | ||| | ||||||| ||| ||||| | || || || || || | | Sbjct 119831 TGCTTGA-TCTGCTCTTTCAGAGAGTTCCAATCCCACA--GGTCACTGGGGGTGACATCC 119775 Query 148461 CACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGT 148520 ||||||||| |||| || || || || | || ||||||||| | ||| || Sbjct 119774 CACATGTCGAACTGAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGA 119715 Query 148521 CCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCA 148580 || | | || || | ||||| || || || || ||| |||||| ||||| Sbjct 119714 CCTTCAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAG 119655 Query 148581 ATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAAC 148640 || ||| |||||||| | ||| | || | ||||| || || || || Sbjct 119654 ATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAG 119595 Query 148641 GCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGC 148700 || ||||| || ||||| || || || |||||||| ||||| |||||| | || Sbjct 119594 GCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGG 119535 Query 148701 GCGCTC-TCGAGCGGATAGTGGTTGCGGTCGATGAT-CTTGTCAAGATTGCGCACCACCA 148758 || ||| | | || |||||||| || ||||| | ||||| ||||| || || | Sbjct 119534 GC-CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAG-TTGCGGACAACAA 119477 Query 148759 CCTTTGTAATTCTGCGCAGCAATTCAAAATCGT---ACTTG-TCATCTACGATGCATCGG 148814 |||| || | | ||||| | || |||| | ||| | | || ||| || Sbjct 119476 CCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACATAGG 119417 Query 148815 TTCACG----GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 || | |||| || || | |||||||| || |||||| || |||| |||||| Sbjct 119416 --CAGGGAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTC 119359 Query 148871 TACGATCTCGGCGCACAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 | ||||| | ||| || ||| |||| || | |||| |||||| || || || Sbjct 119358 GATAATCTCAGTGCAAAGGTTGGAACTGCGAATGGT---TCCCAGGTTCTTCTGGTTACT 119302 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||| |||||| |||||||||| |||| | || ||||| || ||| | ||| Sbjct 119301 CTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTC 119242 Query 148988 CACTATGAACCGA-TGCAGGTCCTGCGCGCGCACTTGCTGCT-----CGTAGCGACCCTC 149041 || || | | | ||| | ||| || |||| || | | || || || Sbjct 119241 CAGAAT-AGCATACCACAGCTTCTGAGC-----CTTGATGGTAAGACGGCCACGTCCTTC 119188 Query 149042 CTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099 | ||||||| | | ||| | ||| ||| || |||| ||||||||||| | | || Sbjct 119187 CCGCTCGTACTTGATGTAGAGAGC--CTCAAATTCCTCACCGTAGCAATCAGCTAAGCCA 119130 Query 149100 GGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAAC 149159 ||||||| || ||||||||||| | ||| |||||| | | || |||||||| ||| Sbjct 119129 GGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAAC 119070 Query 149160 AGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC-AGTCT--TCGGCGCCC 149216 | |||||| | ||| || || | | ||||| || || | ||| || || Sbjct 119069 AAATCGGGGATCCACAGGGCAAGGAACAAATCGCGGGC---GCGAATCTCCTCCTTACCG 119013 Query 149217 ATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACC 149276 ||| || |||| || | || | || |||||||||||||| | ||| | Sbjct 119012 TGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATG 118953 Query 149277 GCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAAC 149333 || | || || |||||| || ||||| ||||||| || | ||||||| || Sbjct 118952 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAG 118893 Query 149334 ACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCG 149393 || || | |||||| ||||||| | | || ||||| || | |||| || Sbjct 118892 ACACGCAGCATAGGAACAATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCA 118833 Query 149394 CGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCGC 149452 || || | ||| |||||| ||||| || ||||| | ||| ||||| || Sbjct 118832 GTAGCACGGATACGGTGGGCGTTGAGACCGATACCACCCGCCAT-CTTGGAGATCATAGC 118774 Query 149453 GCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAA 149512 ||| ||| || ||||| || ||||| ||||| ||||||| | || || Sbjct 118773 ACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAA 118714 Query 149513 GCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT 149572 ||| || | | || || | | || ||||| ||| | ||| || |||||| || Sbjct 118713 GCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGT 118654 Query 149573 -AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCAT 149631 || | || || | ||| | | ||| | || || || || || | | ||| || Sbjct 118653 GAAGAACTTGCTCG-ACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCC 118595 Query 149632 GGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAA 149691 || || | || || ||||| | ||| ||||| || ||||| | | ||| ||| Sbjct 118594 AAATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAA 118535 Query 149692 TTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGC 149751 ||||| | ||| | || | |||||| | |||||||||| ||||| ||||||| Sbjct 118534 GCTTGAGAAGGTAAGATCTCTCCAAGGTCTTGAATCCAAAGTACTGGTAGTTGAAGTCGC 118475 Query 149752 GGCCGTGGTCAATGGCGGCGTC 149773 || | | ||||||| | ||| Sbjct 118474 GGTCATATACAATGGCCGAGTC 118453 >seq191 Length=257482 Score = 120 bits (132), Expect = 3e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||||||| | ||| | | | ||||| |||||||||| Sbjct 143664 GGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 143722 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || || || || |||||||| |||||| || Sbjct 143723 CAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACT 143782 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | |||| || |||| || ||| || |||| ||||| ||| |||||||| Sbjct 143783 TGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 143837 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 || || | ||||||||| ||||| || ||||| || | | | | ||| ||||| | Sbjct 143200 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC--CGAGAGAGTACGGCCATCCTCAA 143257 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| |||| || ||||||||||| || ||||| || |||||||| || Sbjct 143258 GCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGA 143317 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | || || | | ||| || || | ||| | ||| |||| Sbjct 143318 TCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGC 143377 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || || |||||||||||||| Sbjct 143378 CGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 107 bits (118), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || || || ||| |||||| |||||||| Sbjct 142980 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGGCCGTCCTCCAGCTGCTTA 143037 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || ||||||||||| || || ||||| |||||||| |||||| | Sbjct 143038 CCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTC 143097 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | || || | | ||| || || | |||| ||| |||||||||||| Sbjct 143098 TTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGA 143157 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 143158 GTCTTCACGAAGATCTGCAT 143177 >seq419 Length=149002 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || || ||||| |||||| Sbjct 86436 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 86495 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | | ||| || || | ||||| Sbjct 86496 TCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATC 86555 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 86556 GTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 86590 >seq236 Length=225512 Score = 104 bits (114), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||||||||| || ||||| || || || || ||||||||| || ||| Sbjct 196780 AGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTC 196839 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAA 120756 | |||||||| || || || |||| | | || |||| |||||| || || Sbjct 196840 AAACCGGGCATCATACC--ACG-CTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAG 196896 Query 120757 AAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 ||||| | ||||| || ||||||||| || | |||| || || |||| | |||| Sbjct 196897 AAGAAGATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTG 196956 Query 120817 -CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | || |||||||||| |||||| |||||||| ||| | ||| || || Sbjct 196957 TCAGT-AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAAT 197006 >seq438 Length=409217 Score = 102 bits (112), Expect = 8e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 73279 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 73337 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || || || |||||||| |||||| ||| Sbjct 73338 AGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 73397 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| || || ||||| || Sbjct 73398 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 73457 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 73458 CTTGACGAAA 73467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418092843520