Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq236 221 2e-51 seq405 132 7e-25 >seq236 Length=225512 Score = 221 bits (244), Expect = 2e-51 Identities = 401/572 (70%), Gaps = 26/572 (5%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| || || || | |||||||| |||||||| || || ||||| ||| ||||| Sbjct 197400 CGAACCCCTCCTTCAGGATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGA 197341 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||||||||||||| | || | Sbjct 197340 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 197282 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | || |||| ||||| ||| ||| | || |||| ||| Sbjct 197281 TTTCTAAGGATCTTCACG----ACTGGAATAACCGCATGACTAAGGATGAGCAGTTCTTC 197226 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||| || ||||| || ||||||| || || || || ||||||| ||| Sbjct 197225 ATCTCTCACGTTCTTGCCTTCTT-CGCCGCCTCTGACGGTATTGTCAACGAGAACTTGGT 197167 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 || || || | || |||||||| | || || || |||| |||||||| ||||||| Sbjct 197166 CGAGCGTTTCTCTGCT-GAGGTCCAGATCCCCGAAGCCCGTTGCTTTTACGGTTTCCAGA 197108 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||| ||||| || |||||||| | ||||||||||||||| | |||| Sbjct 197107 TCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACCTACATTAAGG 197048 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | || | || ||||||| |||||| ||||| | || | | | Sbjct 197047 AGCCTGCTCAG-CGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGC 196989 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| |||||||||| | |||||||| ||||| ||||| ||| Sbjct 196988 AAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAG----TCGAC-TTTTGCTCAGC 196934 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | ||||||||| || ||||| ||||| ||||| || ||| | |||||| Sbjct 196933 GTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCT 196874 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||||| ||||| || | ||||||||| Sbjct 196873 TTTGGCTGCGCAAGCGTGGTATGATGCCCGGT 196842 >seq405 Length=464752 Score = 132 bits (146), Expect = 7e-25 Identities = 207/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 ||||||| |||| ||| ||||| ||| || | || || ||||| || ||||| || || Sbjct 118635 CATGTCG-AGCAAGTTCTTCAC-TCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCT 118692 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || ||| ||| || ||||| || | |||||||||| || ||||| || ||| Sbjct 118693 CAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAAGACAGTATCGAAGGTATC 118752 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 ||||| || |||||| || || | ||||||||| ||| || || |||||| | | Sbjct 118753 TATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC 118812 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || || | || ||||| | || ||||||||||| || |||||| Sbjct 118813 GCCCACCGTATCCGTGCTACTGGTTCCTACATTGCCGGCACCAACGGTACCTCGAACGGC 118872 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||| || || || ||| |||| || || |||||||| ||| Sbjct 118873 ATTGTTCCTATGCTGCGTGTCTTCAACAACACTGCTCGTTACGTCGATCAG 118923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177767989576576