Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq236 140 4e-28 >seq236 Length=225512 Score = 140 bits (154), Expect = 4e-28 Identities = 556/864 (64%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||||||| ||| |||| || |||||||| || || || || || | | || || || Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAATCCTAATTCTGAA 39442 |||||||| || || || || || || || || || | ||| || | | Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTA---CCGAGAGCGACC 196608 Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 | | | || || || || || ||||| |||||||| | ||| |||||| || | Sbjct 196609 AGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGA 196668 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 || || |||||||| || || ||||| || || ||| | ||||| || || || Sbjct 196669 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGAT- 196727 Query 39563 ATCGATGTTACTACCTCATCA-CTCGGTGGATGCAATAAATGTTTA--------AACATT 39613 ||||| || ||| | || | ||| || | |||| | || | Sbjct 196728 ---GATGTC-CTGGATCAACTGCTTGCTGGG-GCGGT---TGTTCAGGTGAGAGAAAAGA 196779 Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 | |||||| ||||| || || |||||||| | | || | ||||| || || || Sbjct 196780 AGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTC 196839 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 | || ||||| | ||||||||| |||||||| |||| ||||||| ||||| ||| Sbjct 196840 AAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAG 196899 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-- 39791 ||||| || || || || ||||| |||||||| | || | || | | || || | Sbjct 196900 AAGATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCA 196959 Query 39792 GTA-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||| |||||||| | ||||| || || || | || || || || || || || Sbjct 196960 GTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCG 197019 Query 39851 TTAAAGAGATAATGTTTT-TCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || ||||| || ||| | | || || |||| || || || || | || | || Sbjct 197020 TTGAAGAGGTA-TGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTA 197078 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 | || || || ||||| || ||| ||||| || |||||||| || | ||||| | Sbjct 197079 GGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGG 197138 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || ||||| | | | || | || |||| || || || || || || ||| || Sbjct 197139 GATCTGGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGC 197198 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATT 40086 ||| || || || | || || || || | | ||||| |||| ||||| Sbjct 197199 GGCGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATT 197258 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| | | ||| || || | ||| | || || || ||||| || || ||||| || Sbjct 197259 CCAGTCGTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGC 197318 Query 40147 CTTTTTGTACATGTTCCATATATC 40170 ||| |||||||| | ||| || || Sbjct 197319 CTTCTTGTACATTTGCCAGATCTC 197342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904953310720