Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq236 140 4e-28
>seq236
Length=225512
Score = 140 bits (154), Expect = 4e-28
Identities = 556/864 (64%), Gaps = 32/864 (4%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|||||||| ||| |||| || |||||||| || || || || || | | || || ||
Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAATCCTAATTCTGAA 39442
|||||||| || || || || || || || || || | ||| || | |
Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTA---CCGAGAGCGACC 196608
Query 39443 ATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502
| | | || || || || || ||||| |||||||| | ||| |||||| || |
Sbjct 196609 AGAAGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGA 196668
Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562
|| || |||||||| || || ||||| || || ||| | ||||| || || ||
Sbjct 196669 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGAT- 196727
Query 39563 ATCGATGTTACTACCTCATCA-CTCGGTGGATGCAATAAATGTTTA--------AACATT 39613
||||| || ||| | || | ||| || | |||| | || |
Sbjct 196728 ---GATGTC-CTGGATCAACTGCTTGCTGGG-GCGGT---TGTTCAGGTGAGAGAAAAGA 196779
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
| |||||| ||||| || || |||||||| | | || | ||||| || || ||
Sbjct 196780 AGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTC 196839
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733
| || ||||| | ||||||||| |||||||| |||| ||||||| ||||| |||
Sbjct 196840 AAACCGGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAG 196899
Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-- 39791
||||| || || || || ||||| |||||||| | || | || | | || || |
Sbjct 196900 AAGATACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCA 196959
Query 39792 GTA-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
||| |||||||| | ||||| || || || | || || || || || || ||
Sbjct 196960 GTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCG 197019
Query 39851 TTAAAGAGATAATGTTTT-TCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909
|| ||||| || ||| | | || || |||| || || || || | || | ||
Sbjct 197020 TTGAAGAGGTA-TGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTA 197078
Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969
| || || || ||||| || ||| ||||| || |||||||| || | ||||| |
Sbjct 197079 GGTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGG 197138
Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029
|| || ||||| | | | || | || |||| || || || || || || ||| ||
Sbjct 197139 GATCTGGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGC 197198
Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATT 40086
||| || || || | || || || || | | ||||| |||| |||||
Sbjct 197199 GGCGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATT 197258
Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146
|||||| | | ||| || || | ||| | || || || ||||| || || ||||| ||
Sbjct 197259 CCAGTCGTGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGC 197318
Query 40147 CTTTTTGTACATGTTCCATATATC 40170
||| |||||||| | ||| || ||
Sbjct 197319 CTTCTTGTACATTTGCCAGATCTC 197342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686904953310720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |