Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq236 104 2e-17 >seq236 Length=225512 Score = 104 bits (114), Expect = 2e-17 Identities = 365/558 (65%), Gaps = 23/558 (4%) Strand=Plus/Minus Query 43717 TCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAG 43775 |||| || || || || |||||||||||||| || || |||| || || ||||| || | Sbjct 197353 TCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCG 197294 Query 43776 AAGAAGTTGATTTGACTAAAGA-CTTAGCAC-ATTGGATT----GCATTAA-AACCACAA 43828 | || ||||| | |||| || ||| ||| | |||| | |||| | || | | Sbjct 197293 AGGAGATTGATCTTTCTAAGGATCTT--CACGACTGGAATAACCGCATGACTAAGGATGA 197236 Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 | | | || || ||| ||| | || || || || || ||||| || ||||| Sbjct 197235 GCAGTTC--TTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAAC 197178 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || || ||||| || || | || || || | || ||||| || || ||||| Sbjct 197177 GAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTAC 197118 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || || || || || || || ||||| ||||| | ||| | | ||||| || || Sbjct 197117 GGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACC 197058 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGATAGAAAC-AGTACC 44064 ||||| || || || | ||| || | || || || || || || | | || Sbjct 197057 TACATTAAGGA---GCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCC 197001 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTT 44121 ||| ||| | || || ||||||||||| || ||||| | | || || | |||| Sbjct 197000 TGC-ATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAGTCGACTTT 196942 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 || | || ||||| || ||||| | ||| || || || ||||| || || | ||||| Sbjct 196941 TGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGC 196882 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 |||| |||||| | || || ||| ||||||| || ||||| || || || ||| | Sbjct 196881 CTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTCCAACGAGCT 196822 Query 44242 AATAAGTCGTGATGAAGG 44259 || ||||||||| || Sbjct 196821 TATCTCTCGTGATGAGGG 196804 Score = 102 bits (112), Expect = 6e-17 Identities = 194/284 (68%), Gaps = 15/284 (5%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || ||||||||||| | || || | ||| ||||| || || ||||| Sbjct 82690 CCCAAGATTATCAACGGTCCTGAAATTCTCAACAAGTTTGTTGGTCAGTCAGAGGAAAAC 82749 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG---CGCAAAAGT 19545 || || |||||| ||||||| ||||| | | || | |||| || || Sbjct 82750 GTCCGTAAAATGTTTGAGGACGCTG-AGAAGGAGTACAAGGAGAAGGGTGACGAGTCAGG 82808 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 ||| ||| |||| || | |||||| ||||||| |||| || ||| | ||||| Sbjct 82809 CCTT--CACGTTATCATCTTTGATGAACTGGACGCTGTCTGCAAACAACGTGGTTCGGGC 82866 Query 19602 -----TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656 ||||| | || || ||||| ||||||||| ||||| ||| | || || || Sbjct 82867 TCCGGTGGTGGTACAGGTGTTGGTGACAGTGTTGTCAACCAACTGCTGACCAAGTTGGAT 82926 Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||||| |||| || || |||||||| | || || ||||| || Sbjct 82927 GGTGTTGACCAGCTTAACAATATTTTGCTCATCGGTATGACCAA 82970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453829890240