Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq236 104 2e-17
>seq236
Length=225512
Score = 104 bits (114), Expect = 2e-17
Identities = 365/558 (65%), Gaps = 23/558 (4%)
Strand=Plus/Minus
Query 43717 TCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAG 43775
|||| || || || || |||||||||||||| || || |||| || || ||||| || |
Sbjct 197353 TCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCG 197294
Query 43776 AAGAAGTTGATTTGACTAAAGA-CTTAGCAC-ATTGGATT----GCATTAA-AACCACAA 43828
| || ||||| | |||| || ||| ||| | |||| | |||| | || | |
Sbjct 197293 AGGAGATTGATCTTTCTAAGGATCTT--CACGACTGGAATAACCGCATGACTAAGGATGA 197236
Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888
| | | || || ||| ||| | || || || || || ||||| || |||||
Sbjct 197235 GCAGTTC--TTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTCAAC 197178
Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948
|| || ||||| || || | || || || | || ||||| || || |||||
Sbjct 197177 GAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTTTAC 197118
Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008
|| || || || || || || ||||| ||||| | ||| | | ||||| || ||
Sbjct 197117 GGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACCTACTCTTTGCTGATCGACACC 197058
Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGATAGAAAC-AGTACC 44064
||||| || || || | ||| || | || || || || || || | | ||
Sbjct 197057 TACATTAAGGA---GCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCC 197001
Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTT 44121
||| ||| | || || ||||||||||| || ||||| | | || || | ||||
Sbjct 197000 TGC-ATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAGTCGACTTT 196942
Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181
|| | || ||||| || ||||| | ||| || || || ||||| || || | |||||
Sbjct 196941 TGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGC 196882
Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241
|||| |||||| | || || ||| ||||||| || ||||| || || || ||| |
Sbjct 196881 CTCCATCTTTTGGCTGCGCAAGCGTGGTATGATGCCCGGTTTGACTTTCTCCAACGAGCT 196822
Query 44242 AATAAGTCGTGATGAAGG 44259
|| ||||||||| ||
Sbjct 196821 TATCTCTCGTGATGAGGG 196804
Score = 102 bits (112), Expect = 6e-17
Identities = 194/284 (68%), Gaps = 15/284 (5%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || ||||||||||| | || || | ||| ||||| || || |||||
Sbjct 82690 CCCAAGATTATCAACGGTCCTGAAATTCTCAACAAGTTTGTTGGTCAGTCAGAGGAAAAC 82749
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG---CGCAAAAGT 19545
|| || |||||| ||||||| ||||| | | || | |||| || ||
Sbjct 82750 GTCCGTAAAATGTTTGAGGACGCTG-AGAAGGAGTACAAGGAGAAGGGTGACGAGTCAGG 82808
Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601
||| ||| |||| || | |||||| ||||||| |||| || ||| | |||||
Sbjct 82809 CCTT--CACGTTATCATCTTTGATGAACTGGACGCTGTCTGCAAACAACGTGGTTCGGGC 82866
Query 19602 -----TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGAC 19656
||||| | || || ||||| ||||||||| ||||| ||| | || || ||
Sbjct 82867 TCCGGTGGTGGTACAGGTGTTGGTGACAGTGTTGTCAACCAACTGCTGACCAAGTTGGAT 82926
Query 19657 GGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700
|||||| |||| || || |||||||| | || || ||||| ||
Sbjct 82927 GGTGTTGACCAGCTTAACAATATTTTGCTCATCGGTATGACCAA 82970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397453829890240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |