Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq405 228 1e-54 seq236 87.8 2e-12 >seq405 Length=464752 Score = 228 bits (252), Expect = 1e-54 Identities = 940/1467 (64%), Gaps = 43/1467 (3%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| ||||| || || ||||| || || ||||||| || || | || | Sbjct 119938 GGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTG 119879 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||| || ||||| || |||| | || ||| |||| ||| |||| |||||| | | Sbjct 119878 AGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCT 119819 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 | || ||| | ||| || | | | | || || | || | |||||||||| ||||| Sbjct 119818 CTTTCAGAGAGTTCCAATCCCACAGGTCA-CTGGGGGTGACAT-CCCACATGTCGAACTG 119761 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||||| | ||||| ||||| |||| || | ||||| | | || Sbjct 119760 AAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTTCAACAGCGGC 119701 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || || ||||||| ||||| || ||||| |||||||| | || | Sbjct 119700 GATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG 119641 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || || || | || ||||| |||| || | || || |||| || Sbjct 119640 CTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGG-----CATCGGCC 119586 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| || ||||| | |||||| || | ||| ||||| || || || || || Sbjct 119585 AGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACA 119526 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || || ||||||| ||||| | || | ||||| ||| |||| Sbjct 119525 ACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACA 119466 Query 111179 TCATGAAGTTTTTCATAATCAAA--AGT-GCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 || || || || | | || | ||| | || | ||| ||||| || || Sbjct 119465 TCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---ACATAGGCAGGGAGA 119409 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 |||| || ||||| ||||| ||||| |||||| | | |||||| | ||| || Sbjct 119408 GCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCA 119349 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||||||||| ||| || |||| ||||| ||||||||||| |||||| Sbjct 119348 GTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 119289 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||| | |||| | || | || ||||| ||||| | || |||||||| | | Sbjct 119288 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGCATAC 119229 Query 111416 CA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || | |||| | |||| ||||| ||| ||||||||| | Sbjct 119228 CACAGCTTCTGAGCCTTG----ATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGAT 119173 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 |||||| || ||||| |||||||| || | | || || || || || || Sbjct 119172 GTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCA 119113 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | || | ||||| || | |||||| ||||||||||| | || || |||||||| Sbjct 119112 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 119053 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || || | ||| | ||| ||| || | ||| ||||| || | ||||| Sbjct 119052 GGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAG 118993 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 |||||| | | ||| |||||||| ||||| || || | || | || || |||| Sbjct 118992 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---AGGACG 118936 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| | |||| || || || || ||| ||| || || || ||||| |||| Sbjct 118935 CTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAAC 118876 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 ||| || | || ||| || || || ||| || | | || | | | || Sbjct 118875 AATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTG 118816 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | || | || ||||| || ||| ||| ||||| ||||| | | || || | Sbjct 118815 GGCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 118756 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||||||| | ||| ||| ||||| || | | | |||||| || | ||| || Sbjct 118755 ATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 118696 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| || ||||||||||| || | |||||| ||| | | |||| ||| Sbjct 118695 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA--AGAACTTGCTCGAC 118638 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||| || |||| ||| |||| | || || || |||| || || Sbjct 118637 ATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAAATACCGACAGCAACA 118578 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCT 112122 ||||| | ||||| ||| || || | | ||||||| ||| |||| | || | Sbjct 118577 CGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGAT 118518 Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| | ||| |||| |||||||| Sbjct 118517 C-TCTCCAAGGTCTTGAATCCAAAGTA 118492 >seq236 Length=225512 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| ||||||||||| || || ||||| || || ||||| | ||| Sbjct 196785 GGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACC 196844 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| ||||| || |||| | || | | || | || ||||||||||| Sbjct 196845 GGGCATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGAT 196904 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAA 122836 |||||| ||| ||||| |||| ||| || | || || | ||| | ||| || || Sbjct 196905 ACCCTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAG-TCGACTCCTTGTCAGTAA 196963 Query 122837 ACCATTTCATTGCCCATTTCGCCTT 122861 ||| |||| ||||| | ||||| Sbjct 196964 TCCACTTCAGGGCCCAGTCGGCCTT 196988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028483020800