Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq405 235 6e-57 seq236 129 7e-25 >seq405 Length=464752 Score = 235 bits (260), Expect = 6e-57 Identities = 897/1394 (64%), Gaps = 33/1394 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || |||||||| || || | |||| ||| Sbjct 118558 CCTCAGCACATGATTATGCGTGTTGCTGTCGGTATTTGGGGTGATAATGTTGAGCGTGTT 118617 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||| || ||| || ||||| |||| | | ||| |||||| | || ||||||| Sbjct 118618 CTGGAAACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACCCTCT 118675 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || || || | || |||||| | | | || ||||| | Sbjct 118676 TCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAAG 118735 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | |||||||||| || || | | ||||| ||||| ||| ||| | Sbjct 118736 ACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGG 118795 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || | || ||| | | | || | | || ||| || || | Sbjct 118796 GTGGTATCGGTCTCAACGCCCACCGTATCCGTGCTACTGGTTCCTACATTGCCGGCACCA 118855 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | || ||| |||| ||||| || || || ||| ||| || || || | Sbjct 118856 ACGGTACCTCGAACGGCATTGTTCCTATGCTGCGTGTCTTCAACAACACTGCTCGTTACG 118915 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||| | ||| ||||| || || | || | || || ||||| |||| Sbjct 118916 TCGATCAGGGTGGTAACAAGCGTCCT---GGTGCTTTTGCCATTTACCTGGAGCCGTGGC 118972 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | ||||||||||| | || ||||| ||| | |||||| || Sbjct 118973 ACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATTCGCG 119032 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||||||| | ||| || || ||||| || ||| | ||||||||| | |||||| ||| Sbjct 119033 CCCGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAGAAGA 119092 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| | ||| | ||| | || || || || ||||| | | ||| | |||| Sbjct 119093 ACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTAGCTGATTGCTACGGTG 119152 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG--CGACTGCGACGGT 104871 |||| ||||| || || |||| ||||||||| ||||| || | || || || | Sbjct 119153 AGGAATTTGAGGCTCTCTACATCAAGTACGAGCGGGAAGGACGTGGCCGTCTT--ACCAT 119210 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 ||| | || | ||||| | |||||||| | |||| || |||||||||| || | Sbjct 119211 CAAGGCT-CAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACTGAGACTGGTAACCCTT 119269 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||| | ||||| || ||| |||| |||||||| || ||||| |||| || Sbjct 119270 TCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACCATTC 119329 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 |||||||| || || || || || | || | | |||||| ||||||| Sbjct 119330 GCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCGCTGTGT 119389 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGAT 105109 | ||| | || || |||||||||| ||||| || | || |||| | | || Sbjct 119390 GCAACTTGGCGTCGGTCGCTCTCCCTGCCTATGTTGACTACACCAACAACTGC-TACGAC 119448 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | || || ||||| || || || ||| | ||| | ||| | | |||||| Sbjct 119449 TTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTATCATTGAT 119508 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || ||||| |||| || || || || ||| | |||||||| |||||| Sbjct 119509 GTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGCAACATGCGTCACCGTCCCATTGGT 119568 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 105289 | ||||| |||||||| || |||| ||| | |||| | ||||| || | | Sbjct 119569 GTTGGTGTCCAGGGTCTGGCCGATGCCTTCCTGGCCCTTCGCATGCCTTTTGAGTCTGCC 119628 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 || || | |||| || || ||||||||||| || ||||| || || || || Sbjct 119629 GAGGCTCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCACGCTGCCCTGGAAGC- 119687 Query 105350 AGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 105406 |||| || | || | ||||| ||||| || |||| ||||| ||||| | Sbjct 119688 --TTCATGCGACATCGCCGCTGTTGAAGGTCCTTACTCGACCTACGAGGGCTCTCCTGTC 119745 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TACGAC 105463 || || || | ||||| || || ||||||| | || | || || | || | || Sbjct 119746 TCCCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACCCCCAG--TGACCTGTGGGAT 119802 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||| | |||| || || | |||||| |||| ||| |||| ||| || || |||| Sbjct 119803 TGGAACTCTCTGAAAGAGCAGATCAAGCAGAACGGTGTTCGCAACTCGCTGCTTGTGGCG 119862 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 105583 || ||||| || ||||| || | || || ||||||| || || ||||| || || ||| Sbjct 119863 CCCATGCCCACTGCCTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTAC 119922 Query 105584 ACGACGAACATCTA 105597 || | ||||| || Sbjct 119923 ACTTCAAACATTTA 119936 >seq236 Length=225512 Score = 129 bits (142), Expect = 7e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715 |||||| ||| | || || |||| || |||||||| |||| || | | || Sbjct 197085 GGAGACCTACTCTTTGCTGATCGACACCTACATTAAGGAGCCTGCTCAGCGCACATACCT 197026 Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775 ||| | ||||| | || |||| || |||| || || || ||||| ||||||| Sbjct 197025 CTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTG 196966 Query 94776 GTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 | || | |||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 196965 GATTACTGACAAGGAGTCGACTT---TTGCTCAGCGTCTTGTTGCCTTTGCCGCTGTTGA 196909 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||||||||| | || | | || | |||||| ||||| ||| | || Sbjct 196908 GGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTTTGGCTGCGCAAGCGTGGTATGAT 196849 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||| | |||||||||||||||||||||||||| ||||| || ||| || || Sbjct 196848 GCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTT 196789 Query 94953 TGC 94955 ||| Sbjct 196788 TGC 196786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257533739520