Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq191 147 7e-30
seq53 120 9e-22
seq438 98.7 3e-15
seq419 96.9 1e-14
>seq191
Length=257482
Score = 147 bits (162), Expect = 7e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| || ||||||||||| || ||||| || || ||
Sbjct 143403 CATACCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 143462
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||||||||| ||||| || || || ||
Sbjct 143463 GGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGG 143522
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || || || | ||||| | ||
Sbjct 143523 GGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTC 143582
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || | ||||| || || || || || ||||| ||||||||
Sbjct 143583 AACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 143633
Score = 131 bits (144), Expect = 5e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| |||||||| | | ||||| || || || |||||||| || || || || |
Sbjct 142943 TTTACTGGCCACCACGGAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGT 143002
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| ||||| | || || || || || || || || ||||||||||| ||||| ||||| |
Sbjct 143003 AGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGT 143062
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || ||||| || || ||| || || || || || | ||||||
Sbjct 143063 CCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCAGAA 143121
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || ||||| || | ||||| ||||| || || || || || ||||||||
Sbjct 143122 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177
Score = 129 bits (142), Expect = 2e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | ||||| || ||||| || || || || || ||
Sbjct 143175 CATACCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 143234
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||| || || || || ||||| || ||
Sbjct 143235 CGAGAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 143294
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 143295 GGGGATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTC 143354
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| |||| ||||| ||||| || || || || |||||||||||
Sbjct 143355 GACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405
Score = 122 bits (134), Expect = 3e-22
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || ||||| ||||| || ||||| || || || || |||||
Sbjct 143631 CATACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATC 143690
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || ||||| || || || || ||||| || ||
Sbjct 143691 GGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGG 143750
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || ||||| ||||| | ||| || | ||
Sbjct 143751 GGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTC 143810
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || || || | ||||| |||||
Sbjct 143811 AACCTCGAGGGTGATGGTCTTGCCGGT 143837
>seq53
Length=38260
Score = 120 bits (132), Expect = 9e-22
Identities = 262/390 (67%), Gaps = 2/390 (1%)
Strand=Plus/Minus
Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551
|| |||||||| | || ||||| || || || | | ||||| || || || || ||
Sbjct 12170 ATCGAGGTTGAGTTCAAGGGTGAGACCAAGACCTTCACT-CCCGAGGAGATCTCCTCCAT 12112
Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611
||| | | || ||| || | |||||| | || | ||| || || | | ||
Sbjct 12111 GGTCCTGATCAAGATGCGTGAGACTGCTGAGTCCTACCTCGGTACCACCGTCAACCAGGC 12052
Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671
|| | ||||| || ||||| || || || | |||||| || ||||| ||||||||
Sbjct 12051 CGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACAAAGGATGCTGG 11992
Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731
||||| || | || ||||| | || || || || || |||||||| || || ||
Sbjct 11991 TTTGATTGCTGGTCTTAACGTTCTCCGTATCATCAACGAGCCTACTGCTGCTGCCATCGC 11932
Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791
|| || ||||| || | | || || || | || || || ||| | |||||
Sbjct 11931 CTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTTGGTGG 11872
Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851
||||||||| ||||| || || || || |||| || || || || || || || | ||
Sbjct 11871 TGGTACTTTCGATGTTTCCCTCCTTACCATTGAGGATGGTATCTTCGAGGTCAAGTCCAC 11812
Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGA 349881
||||||||| || || |||||||| |||||
Sbjct 11811 TGCTGGTGACACTCACCTTGGTGGTGAAGA 11782
>seq438
Length=409217
Score = 98.7 bits (108), Expect = 3e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || || || || ||||| ||||| || || || || || ||
Sbjct 73246 ATACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 73305
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 73306 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGG 73365
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || || || ||||| || || | || || || || || | || || | ||
Sbjct 73366 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 73425
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || || | ||||| || || || || || || |||
Sbjct 73426 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 73467
>seq419
Length=149002
Score = 96.9 bits (106), Expect = 1e-14
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || ||||| | || || ||||| || || || || ||||| |||||
Sbjct 86403 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 86462
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || || ||||| || || || ||||| || || | || || || ||
Sbjct 86463 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 86522
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|||| || || | || || ||||| || | ||||| || || || || || || |||
Sbjct 86523 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 86582
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 86583 ATCTGCAT 86590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515245702439744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |