Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq405 244 1e-59 seq429 134 2e-26 seq236 104 3e-17 >seq405 Length=464752 Score = 244 bits (270), Expect = 1e-59 Identities = 367/518 (71%), Gaps = 4/518 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| ||| || |||||| | || ||||| |||||||| ||||| ||| |||||| | Sbjct 118645 AAGTTCTTCACTCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTT 118704 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||| |||| | |||||||| ||| ||||| || ||||| || || ||| Sbjct 118705 TCTTCCTGCTTCTTGGTAGACATGAAGGAAGACAGTATCGAAGGTATCTATGATACCCTC 118764 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGT- 53445 ||| ||||| ||||||||| | |||||||||||||| || || || | | ||| Sbjct 118765 AAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC-GCCC-ACCGTA 118822 Query 53446 -CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 |||||| | || | || || || ||||| | | | || || || |||| Sbjct 118823 TCCGTGCTACTGGTTCCTACATTGCCGGCACCAACGGTACCTCGAACGGCATTGTTCCTA 118882 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || |||||||||||||| || || |||||| | ||||||||| ||||| | Sbjct 118883 TGCTGCGTGTCTTCAACAACACTGCTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCTG 118942 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | | || ||||| ||||| |||||||||||||| || | | ||||| || || || | Sbjct 118943 GTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTCC 119002 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684 | ||| || ||| | || ||||| ||| ||| || |||| || |||||||| | Sbjct 119003 GGAAGAACCACGGTAAGGAGGAGATTCGCGCCCGCGATTTGTTCCTTGCCCTGTGGATCC 119062 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | || | |||||| | || |||||| ||| || ||| ||| |||||||| |||| Sbjct 119063 CCGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACG 119122 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||||| ||| | | | |||||||||||| ||| Sbjct 119123 AGTGCCCTGGCTTAGCTGATTGCTACGGTGAGGAATTT 119160 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || ||||||||| | ||| | | | || | ||| |||||| |||||||| | Sbjct 120105 GACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCTGACCGTGGTGCCTT 120164 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 || || ||||| ||||| ||||||| |||| || | || | ||| |||| | | Sbjct 120165 TATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACCATGGGCAAGATTAC 120224 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | ||||||||| || |||||| || |||||||||||||||||||| ||||| || Sbjct 120225 CAGCATGCACTTTGCGGGTTGGAAGCTTGGTCTCAAGACGGGTATGTACTACCTGCGTAC 120284 Query 55924 CC 55925 || Sbjct 120285 CC 120286 >seq429 Length=129737 Score = 134 bits (148), Expect = 2e-26 Identities = 196/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||| ||| ||||||| |||||||| |||||||||||||| | |||| Sbjct 62370 AGACGAGTGTGAATATAACGAGCCGAGGCAGCATCTGAACCACCAGCAAGACGAGAACCG 62311 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || |||| | || | |||||| | || ||||||| ||||| | Sbjct 62310 AAGTTACCACTGGGTTCCAGGCAATTGACGTTGTTAGAACCGACAAAGTCCTGAGCAAGA 62251 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | |||||| || ||| || ||||| || || |||| |||||| | | || Sbjct 62250 CCAATAATCGTCTGCTGCAGGGAAGCTTCACCGTGTTGGTACGACGTCTGACCAGAAACA 62191 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| || | | ||||||||||| ||| ||| ||| |||||| || |||| Sbjct 62190 TAACCAGCCAACTCAACAACCTTCATGTCCTTGA--TCACGTTACTCTTGAAACAAGCAT 62133 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || ||||||||||||| |||||||| |||||| Sbjct 62132 ACATAACCTTGCGCTGACCCGGCTTCAGTCCATCC 62098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| ||||| || || || | || || | ||| ||| || ||| || Sbjct 62344 GGCAGCATCTGAACCACCAGCAAGACGAGAACCGAAGTTACCACTGGGTTCCAGGCAATT 62285 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | || || || | |||||| | | | |||||| |||||| || Sbjct 62284 GACGTTGTTAGAACCGACAAAGTCCTGAGCAAGACCAATAATCGTCTGCTGCAGGGAAGC 62225 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||| || |||| |||||| | | | || || ||||||| | |||||||| Sbjct 62224 TTCACCGTGTTGGTACGACGTCTGACCAGAAACATAACCAGCCAACTCAACAACCTTCAT 62165 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||| | ||| ||| |||||| ||| || || || ||||||||||| Sbjct 62164 GTCCTTGATCACGTTACTCTTGAAACAAGCATACATAACCTTGCGCTG 62117 >seq236 Length=225512 Score = 104 bits (114), Expect = 3e-17 Identities = 555/871 (64%), Gaps = 22/871 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||| | || ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 196498 TAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATG 196557 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| | || ||| | | | | | | || | | | ||| || | Sbjct 196558 AAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGT-TACCGAGAGCGA-CCAGAAGAC 196615 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || || || | ||||| |||| | |||| ||| |||| || || Sbjct 196616 GGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGC 196675 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCTTG 74699 | || || |||||||| | ||||| |||| | || || || || | || | Sbjct 196676 AGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTG-ATGATGTCC 196734 Query 74700 TGAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 || || || ||| |||| || | ||||||||||| |||| | || |||||| Sbjct 196735 TGGATCAACTGCTTGCTGGGGCGGTTGT---TCAGGTGAGAGAAAAGAAGGCA-GGCAAA 196790 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 ||| || || ||||| | || | || || || || | | || ||||| Sbjct 196791 GTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCAT 196850 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 | |||||||| || ||||||||||| || | |||| ||||||||| || || Sbjct 196851 CATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTC 196910 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGT 74932 ||| |||||||| ||||| || || || || || | | | ||| ||||| | Sbjct 196911 AACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTT 196970 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGC 74991 | | ||||| || || || || || |||||| | ||| || || || | ||||||| Sbjct 196971 CAGGGCCCAGTCGGCCTTGCG-GCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGT 197029 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 || || | || ||||| | | |||| |||| | ||||| |||||||| | Sbjct 197030 ATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTCCGAGT 197089 Query 75052 GAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 |||| ||| | | |||| | |||| || | || || || | ||||| || | Sbjct 197090 GAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGGACCT 197149 Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | || ||| | | | | ||||| |||| || ||||| ||||||||||| || | Sbjct 197150 CAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGG 197209 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAG---TGAGTTTGTCCCAATCCTTCA 75228 | || || ||| ||| ||||||| | || || | || | ||| || | | Sbjct 197210 CAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCGTGAA 197269 Query 75229 GGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 | ||| | | ||||||||||||| | ||||||||| | ||||| ||||||| Sbjct 197270 GATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACA 197329 Query 75289 AAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||| | || |||| ||||| || || Sbjct 197330 TTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212935590400