Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq405 244 1e-59
seq429 134 2e-26
seq236 104 3e-17
>seq405
Length=464752
Score = 244 bits (270), Expect = 1e-59
Identities = 367/518 (71%), Gaps = 4/518 (1%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| ||| || |||||| | || ||||| |||||||| ||||| ||| |||||| |
Sbjct 118645 AAGTTCTTCACTCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTT 118704
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| ||||||| |||| | |||||||| ||| ||||| || ||||| || || |||
Sbjct 118705 TCTTCCTGCTTCTTGGTAGACATGAAGGAAGACAGTATCGAAGGTATCTATGATACCCTC 118764
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGT- 53445
||| ||||| ||||||||| | |||||||||||||| || || || | | |||
Sbjct 118765 AAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC-GCCC-ACCGTA 118822
Query 53446 -CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504
|||||| | || | || || || ||||| | | | || || || ||||
Sbjct 118823 TCCGTGCTACTGGTTCCTACATTGCCGGCACCAACGGTACCTCGAACGGCATTGTTCCTA 118882
Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564
|||| || |||||||||||||| || || |||||| | ||||||||| ||||| |
Sbjct 118883 TGCTGCGTGTCTTCAACAACACTGCTCGTTACGTCGATCAGGGTGGTAACAAGCGTCCTG 118942
Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624
| | || ||||| ||||| |||||||||||||| || | | ||||| || || || |
Sbjct 118943 GTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTCC 119002
Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684
| ||| || ||| | || ||||| ||| ||| || |||| || |||||||| |
Sbjct 119003 GGAAGAACCACGGTAAGGAGGAGATTCGCGCCCGCGATTTGTTCCTTGCCCTGTGGATCC 119062
Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744
| || | |||||| | || |||||| ||| || ||| ||| |||||||| ||||
Sbjct 119063 CCGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACG 119122
Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
||||||| ||| | | | |||||||||||| |||
Sbjct 119123 AGTGCCCTGGCTTAGCTGATTGCTACGGTGAGGAATTT 119160
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803
||| || ||||||||| | ||| | | | || | ||| |||||| |||||||| |
Sbjct 120105 GACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCTGACCGTGGTGCCTT 120164
Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863
|| || ||||| ||||| ||||||| |||| || | || | ||| |||| | |
Sbjct 120165 TATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACCATGGGCAAGATTAC 120224
Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923
| ||||||||| || |||||| || |||||||||||||||||||| ||||| ||
Sbjct 120225 CAGCATGCACTTTGCGGGTTGGAAGCTTGGTCTCAAGACGGGTATGTACTACCTGCGTAC 120284
Query 55924 CC 55925
||
Sbjct 120285 CC 120286
>seq429
Length=129737
Score = 134 bits (148), Expect = 2e-26
Identities = 196/275 (71%), Gaps = 4/275 (1%)
Strand=Plus/Minus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
|| |||||| ||| ||||||| |||||||| |||||||||||||| | ||||
Sbjct 62370 AGACGAGTGTGAATATAACGAGCCGAGGCAGCATCTGAACCACCAGCAAGACGAGAACCG 62311
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | ||||| || |||| | || | |||||| | || ||||||| ||||| |
Sbjct 62310 AAGTTACCACTGGGTTCCAGGCAATTGACGTTGTTAGAACCGACAAAGTCCTGAGCAAGA 62251
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478
| |||||| || ||| || ||||| || || |||| |||||| | | ||
Sbjct 62250 CCAATAATCGTCTGCTGCAGGGAAGCTTCACCGTGTTGGTACGACGTCTGACCAGAAACA 62191
Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536
|| || |||| || | | ||||||||||| ||| ||| ||| |||||| || ||||
Sbjct 62190 TAACCAGCCAACTCAACAACCTTCATGTCCTTGA--TCACGTTACTCTTGAAACAAGCAT 62133
Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| || ||||||||||||| |||||||| ||||||
Sbjct 62132 ACATAACCTTGCGCTGACCCGGCTTCAGTCCATCC 62098
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108
||| ||||| ||||| || || || | || || | ||| ||| || ||| ||
Sbjct 62344 GGCAGCATCTGAACCACCAGCAAGACGAGAACCGAAGTTACCACTGGGTTCCAGGCAATT 62285
Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168
|| |||||| | || || || | |||||| | | | |||||| |||||| ||
Sbjct 62284 GACGTTGTTAGAACCGACAAAGTCCTGAGCAAGACCAATAATCGTCTGCTGCAGGGAAGC 62225
Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228
||||||||| || |||| |||||| | | | || || ||||||| | ||||||||
Sbjct 62224 TTCACCGTGTTGGTACGACGTCTGACCAGAAACATAACCAGCCAACTCAACAACCTTCAT 62165
Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276
|||| | ||| ||| |||||| ||| || || || |||||||||||
Sbjct 62164 GTCCTTGATCACGTTACTCTTGAAACAAGCATACATAACCTTGCGCTG 62117
>seq236
Length=225512
Score = 104 bits (114), Expect = 3e-17
Identities = 555/871 (64%), Gaps = 22/871 (3%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|||||| | || ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 196498 TAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTCTCCATG 196557
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
||||||| ||||| | || ||| | | | | | | || | | | ||| || |
Sbjct 196558 AAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGT-TACCGAGAGCGA-CCAGAAGAC 196615
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
| || || || || | ||||| |||| | |||| ||| |||| || ||
Sbjct 196616 GGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGAGCGC 196675
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCTTG 74699
| || || |||||||| | ||||| |||| | || || || || | || |
Sbjct 196676 AGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTG-ATGATGTCC 196734
Query 74700 TGAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755
|| || || ||| |||| || | ||||||||||| |||| | || ||||||
Sbjct 196735 TGGATCAACTGCTTGCTGGGGCGGTTGT---TCAGGTGAGAGAAAAGAAGGCA-GGCAAA 196790
Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815
||| || || ||||| | || | || || || || | | || |||||
Sbjct 196791 GTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCAT 196850
Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875
| |||||||| || ||||||||||| || | |||| ||||||||| || ||
Sbjct 196851 CATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTC 196910
Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAAGT 74932
||| |||||||| ||||| || || || || || | | | ||| ||||| |
Sbjct 196911 AACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTT 196970
Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGC 74991
| | ||||| || || || || || |||||| | ||| || || || | |||||||
Sbjct 196971 CAGGGCCCAGTCGGCCTTGCG-GCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGT 197029
Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051
|| || | || ||||| | | |||| |||| | ||||| |||||||| |
Sbjct 197030 ATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGGTCTCCGAGT 197089
Query 75052 GAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111
|||| ||| | | |||| | |||| || | || || || | ||||| || |
Sbjct 197090 GAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGGACCT 197149
Query 75112 CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171
| || ||| | | | | ||||| |||| || ||||| ||||||||||| || |
Sbjct 197150 CAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGG 197209
Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAG---TGAGTTTGTCCCAATCCTTCA 75228
| || || ||| ||| ||||||| | || || | || | ||| || | |
Sbjct 197210 CAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCGTGAA 197269
Query 75229 GGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288
| ||| | | ||||||||||||| | ||||||||| | ||||| |||||||
Sbjct 197270 GATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACA 197329
Query 75289 AAGACCACAAGTCAGGGTAATTGATTGGAAA 75319
||| | || |||| ||||| || ||
Sbjct 197330 TTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212935590400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |