Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq405 259 5e-64 seq191 194 2e-44 seq438 150 2e-31 seq419 127 2e-24 >seq405 Length=464752 Score = 259 bits (286), Expect = 5e-64 Identities = 906/1400 (65%), Gaps = 36/1400 (3%) Strand=Plus/Minus Query 80374 CGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGA 80433 || ||| | || | ||||| |||||||||||| || ||||||||| || || ||||| Sbjct 119945 CGGCGCTGGTAAATGTTTGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGG 119886 Query 80434 GCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTG 80493 | || || || ||||| || | || | ||| || || || | |||| || |||| Sbjct 119885 GAAGTTGAGGCAGTGGGCATGGGCGCCACAAGCAGCGAGTTGCGAACACCGTTCTGCTTG 119826 Query 80494 ATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGAC--CCCACA 80545 || | ||| || | |||| || || || | ||| |||| |||||| Sbjct 119825 ATCTGCTCTTTCAGAGAGTTCCAA---TC--CCACAGGTCACTGGGGGTGACATCCCACA 119771 Query 80546 TGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCT 80605 ||||| ||| | ||| |||| || | ||||| ||| || | ||| ||| || || | Sbjct 119770 TGTCGAACTGAAGGATACCCTGGGAGACAGGAGAGCCCTCGTAGGTCGAGTAAGGACCTT 119711 Query 80606 CCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGC 80665 | ||| | || || || | ||||| ||||| |||||| |||||||| Sbjct 119710 CAACAGCGGCGATGTCGCATGAAGCTTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCT 119651 Query 80666 CCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGT 80725 |||||| | || |||| | || || | || || | || ||| | | Sbjct 119650 GCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCAT 119591 Query 80726 CAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC--GGC 80783 | ||||| ||||| || || | | || || ||||| ||| |||| | | | || ||| Sbjct 119590 CGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTT-GCT-GTTCCGGGC 119533 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 ||| || ||||| ||| ||| |||| ||||||| |||||| ||||||| Sbjct 119532 CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTT 119473 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCA-CAAATGCCGG 80897 || ||||| || || ||||| |||||| | | ||| | ||| || | || || Sbjct 119472 GGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACATAGGCAGG 119413 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || | ||||||| |||||||| || ||||| |||| | | |||||| || Sbjct 119412 GAGAGCGACCGACGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAAT 119353 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 || ||||| | || ||| ||| || |||||||| |||||||| |||| ||| Sbjct 119352 CTCAGTGCAAAGGTTGGAACTGCGAATGGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTT 119293 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| |||||||| ||||| | ||| |||| ||||| ||| | | || || || Sbjct 119292 GCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCAGTCTGAGCTTCCAGAATAGC 119233 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 | ||| | || | ||||||| ||| ||||| | | |||||| Sbjct 119232 ATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGAT 119173 Query 81138 GTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 ||| | || || | |||||| |||| | | | ||||||||||| ||||| Sbjct 119172 GTAGAGAGCCTCAAATTCCTCACCGTAGCAATCAGCTAAGCCAGGGCACTCGTTGGGGCA 119113 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| ||| ||| ||| || ||||| ||| ||||||||| || |||||||| || Sbjct 119112 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 119053 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 ||| ||||| |||||| ||| |||||| | ||| ||||| || | || || Sbjct 119052 GGCAAGGAACAAATCGCGGGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAG 118993 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTT 81371 || || | | || || ||||| |||||||| || | ||| | | || | ||| Sbjct 118992 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 118933 Query 81372 GCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 | | |||||||| | ||||||||| ||||| ||| || ||||||| |||||| | Sbjct 118932 GTTA---CCACCCTGATCGACGTAACGAGCAGTGTTGTTGAAGACACGCAGCATAGGAAC 118876 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTG 81489 || || | || |||||| || || | || || || | || || || || Sbjct 118875 AATGCCGTTCGAGGTACCGTTGGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTG 118816 Query 81490 CTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549 ||| |||||||| ||||| | | ||| || ||| |||||| || | ||| Sbjct 118815 GGCGTTG--AGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTA 118758 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 ||||| || || ||||| || |||| |||||||| | |||||| ||| || | |||| Sbjct 118757 TCATAGATACCTTCGATACTGTCTTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGA 118698 Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 || | ||||| ||||| || || || | |||||| |||| | | | ||| Sbjct 118697 GGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGAC 118638 Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 || |||| || |||||| || || || || ||||| |||||||| ||| ||| Sbjct 118637 ATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAAATACCGACAGCAACA 118578 Query 81730 CGCATAAACATGTACTGGGG 81749 ||||||| ||||| ||| || Sbjct 118577 CGCATAATCATGTGCTGAGG 118558 >seq191 Length=257482 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || ||||| ||||||||||| | Sbjct 143633 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 143574 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| ||||| || ||||| Sbjct 143573 GACACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAA 143514 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || ||||||| |||||||| | ||||| || Sbjct 143513 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAAC 143454 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || || ||| | || ||||| ||||| Sbjct 143453 ATTCAGAAGGAGTCTACTCTCCACCTTGTCCTCCGCCTTCGTGGTGG 143407 Score = 181 bits (200), Expect = 1e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||||| | Sbjct 143177 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 143118 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| || || |||||||||||||| ||||| || |||||| Sbjct 143117 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 143058 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || ||||| | |||||||| | ||||| || Sbjct 143057 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 142998 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || || || | ||||| || ||||| || Sbjct 142997 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTCCGTGGTGGCCA 142948 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| ||||| |||||||| ||||| Sbjct 143405 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 143346 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 143345 GATACTATCGACAATGTTAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 143286 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||||||||| || ||||||| ||||| || | ||||| || Sbjct 143285 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 143226 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| | || | |||||||| ||||| Sbjct 143225 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 143179 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||||||||| |||| ||||| ||| | ||| | Sbjct 143837 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGTCC 143778 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 143777 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAG 143718 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| | || || || |||| ||||| ||||| ||||| Sbjct 143717 CAGCTTGAGGATGGCCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACCCTTCAC 143658 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 143657 CTTGTCCTCCGCCTTCGTGGTGG 143635 >seq438 Length=409217 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| || || || ||||| ||||| || | ||| Sbjct 73466 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 73407 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| || Sbjct 73406 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGCCTG 73347 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 73346 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 73287 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || || ||| | ||||| || ||||| Sbjct 73286 GAGTCCACTCTCCACCTGGTCCTCCGTCTCCGTGGTGG 73249 >seq419 Length=149002 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 86590 ATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCTTCG 86531 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 86530 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 86471 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 86470 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAAC 86411 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 86410 ATCCAGAAGG 86401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307206261760