Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq191 197 3e-45 seq438 178 3e-39 seq419 159 8e-34 >seq191 Length=257482 Score = 197 bits (218), Expect = 3e-45 Identities = 177/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||| ||||| || || ||||| || || | ||||| Sbjct 143412 ACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 143471 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || |||||||| || |||||||| || |||| || Sbjct 143472 ACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCC 143531 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || ||||| ||||||||||||||| ||||||||||| Sbjct 143532 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAG 143591 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || |||||||| ||||| | |||||| Sbjct 143592 AGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 143633 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| |||||||| || |||||||| ||||| | ||||| Sbjct 143640 ACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 143699 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || ||||| || ||||| || |||| || Sbjct 143700 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACC 143759 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || || ||||| || ||| ||||||||||| Sbjct 143760 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAG 143819 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 143820 GGTGATGGTCTTGCCGGTGA 143839 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 142966 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 143025 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || |||||||| || || ||||| || |||| || ||||||||| Sbjct 143026 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 143085 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| ||||| || ||||| |||||||| ||| Sbjct 143086 TGGATCTTGCTCTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTC 143145 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 143146 TTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| |||||||| || |||||||| || |||| || || Sbjct 143184 ACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGAGT 143243 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||| || ||||| || ||||| || || | || Sbjct 143244 ACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACC 143303 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||| || || || || ||||| || Sbjct 143304 CTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGACCTCAAG 143363 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || ||||| || || | |||||| Sbjct 143364 GGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 >seq438 Length=409217 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || |||| ||||| | ||||| Sbjct 73264 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 73323 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 73324 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 73383 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 73384 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 73443 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 73444 TTACCCGTCAGGGTCTTGACGAA 73466 >seq419 Length=149002 Score = 159 bits (176), Expect = 8e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | |||||| | ||||| |||||||||||||| |||||||| Sbjct 86403 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 86462 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||||||||| || ||||| ||| Sbjct 86463 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 86522 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || ||||| || || ||||| || ||||||||||| ||||| || ||||| || || Sbjct 86523 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 86582 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 86583 ATCTGCATCTT 86593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145346467520