Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq191 84.2 2e-11 >seq191 Length=257482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || ||||| || || ||||| Sbjct 142986 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAA 143045 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||||||||||||||| | ||| | || ||| |||||| ||| || |||| ||| Sbjct 143046 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 143104 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||||| ||||| || || | ||||| | || || ||||| || || | Sbjct 143105 TGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCA 143164 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 143165 CGAAGATCTGCAT 143177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| || || || | || |||||||| || || ||||| Sbjct 143442 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAA 143501 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||||||||| ||||| | ||| | || ||| |||||| || ||| |||| ||| Sbjct 143502 GATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 143560 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || ||||| || || | ||||| | || || ||||| || || | Sbjct 143561 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 143620 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 143621 CAAAGATCTGCAT 143633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543254681024