Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq191 149 1e-30 seq438 145 2e-29 seq419 105 2e-17 >seq191 Length=257482 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||||||||| || || || || | ||||| |||| | || Sbjct 143412 ACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 143471 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 143472 ACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGGAATGCC 143531 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||||||||| |||| || || || | Sbjct 143532 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAG 143591 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||| ||| || Sbjct 143592 AGTGATGGTCTTGCCAGTCAGAGTCTT 143618 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || ||||| || || |||| |||||||||| | || Sbjct 143640 ACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 143699 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || ||||| || |||||||| Sbjct 143700 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACC 143759 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || ||||| || |||| || || || | Sbjct 143760 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAG 143819 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 143820 GGTGATGGTCTTGCCGGT 143837 >seq438 Length=409217 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| ||||| || | || || | ||||| Sbjct 73264 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 73323 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || |||||||| |||||||| Sbjct 73324 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 73383 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 73384 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 73443 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || || | ||| Sbjct 73444 TTACCCGTCAGGGTCTTGACGAA 73466 >seq419 Length=149002 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| ||||||||||| || || || ||||| || ||||| || ||| Sbjct 86433 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 86492 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||| ||||| || | || || || | ||| Sbjct 86493 TTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTG 86552 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| ||||| | || || | ||| | ||||| || Sbjct 86553 ATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCATCTT 86593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524354870912