Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq236 104 3e-17 >seq236 Length=225512 Score = 104 bits (114), Expect = 3e-17 Identities = 365/565 (65%), Gaps = 10/565 (2%) Strand=Plus/Plus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 |||||||| ||||| | | || | ||||| || || || | ||||||||| | ||| Sbjct 196798 TGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCATACCA 196857 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || |||||||| || | || |||| ||||| ||||| || || || || || Sbjct 196858 CGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCG 196917 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT--GTA-TCCACCGTTGTGCC 48332 ||||| || ||| | || | || | | || |||| ||| ||||| | ||| Sbjct 196918 GCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCC 196977 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttt 48392 || || ||||| | || || || || || || || || ||||| | | Sbjct 196978 CAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCGC 197037 Query 48393 tCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATAT 48450 | | || |||| ||| || || || | ||||| || | || |||||||| | Sbjct 197038 TGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGG--TCTCCGAGTGAATGT 197095 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 | || || ||||| || |||||||| || | ||||| | |||||| ||||| | | Sbjct 197096 TCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGGACCTCAGCAG 197155 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 | || || || |||| ||||| || || || || ||| || || || || || | | Sbjct 197156 AGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAGAAGGCAAGAA 197215 Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTT 48627 | || || || | | || | ||||| | ||||||||||| | | ||| | Sbjct 197216 CGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCGTGAAGATCCT 197275 Query 48628 TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCC 48687 | || | ||| | || || || ||||| || || ||||| || || || ||||| | || Sbjct 197276 TAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCC 197335 Query 48688 ATATATCACTGTATTGGATTGGGAA 48712 | || || ||| | ||| ||||| Sbjct 197336 AGATCTCGTGGTACTTGATAGGGAA 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664909854720