Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq236 120 4e-22 >seq236 Length=225512 Score = 120 bits (132), Expect = 4e-22 Identities = 556/875 (64%), Gaps = 18/875 (2%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 |||||||| ||| | ||||| |||||||| || || || || || | | || || || Sbjct 196492 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGAGAGATGTTC 196551 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| || || || || || || | || || | || | || | | | Sbjct 196552 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGA 196611 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | || || ||||| || || || |||||||| | ||| |||||| || | || Sbjct 196612 AGACGGTCGGCGACGAACTCGATGTAGGTTTTCATGAGGTCAGCATTCATACCGAGAAGA 196671 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT- 46577 | || |||||||| ||||| ||||| | ||||| ||| ||||| | || || Sbjct 196672 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 196731 Query 46578 -CGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGC 46634 | | | |||| || || || || || ||| || || | | || || Sbjct 196732 TCCTGGATCAACTGCTTGCTGG---GGCGGTTGT-TCAGGTGAGAGAAAAGAAGGCAGGC 196787 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| || ||||| || ||||| | | || | ||||| || || || | || || Sbjct 196788 AAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGG 196847 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| | |||||||| |||||||| || | || |||| ||||| ||||| || || Sbjct 196848 CATCATACCACGCTTGCGCAGCCAAAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACC 196907 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCA 46811 || ||||| || || || ||||| | || | || | | || || | | ||||| Sbjct 196908 CTCAACAGCGGCAAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCA 196967 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | | | ||||| || ||||| | || || || || || || || || ||||| Sbjct 196968 CTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAG 197027 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTCT 46929 | | | | || || |||| || || || || | ||||| || | || Sbjct 197028 GTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCGATCAGCAAAGAGTAGG--TCTCC 197085 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 || |||||||| || || ||||| || |||||||| || | ||||| | ||||| Sbjct 197086 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCAACGGGCTTCGGGGATCTGG 197145 Query 46990 ACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAA 47049 ||||| | | | || || || ||| ||||| || || || || ||| || || || Sbjct 197146 ACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAGGCGGCGAAG 197205 Query 47050 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCA 47106 || || | || || || || | | ||||| |||||| | ||||||||||| Sbjct 197206 AAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTAGTCATGCGGTTATTCCAGTCG 197265 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 | | ||| || || | ||| | || || || |||||||| || ||||| || || || Sbjct 197266 TGAAGATCCTTAGAAAGATCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTG 197325 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAA 47201 ||||| | ||| || || | || | ||| || || Sbjct 197326 TACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 197360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930407567360