Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq419 183 6e-41 seq438 179 8e-40 seq191 170 4e-37 seq236 132 1e-25 seq429 100 6e-16 >seq419 Length=149002 Score = 183 bits (202), Expect = 6e-41 Identities = 155/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| |||||||||||||| || || || || || |||||| Sbjct 86403 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 86462 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 86463 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 86522 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||||| ||||| || || ||||||||||||||||| | ||||||||||| Sbjct 86523 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 86582 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 86583 ATCTGCATCTT 86593 >seq438 Length=409217 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 73248 ACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 73307 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || || ||||| || Sbjct 73308 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 73367 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 73368 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 73427 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| ||||||||||||| ||||| ||||| Sbjct 73428 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 73466 >seq191 Length=257482 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | || || || |||||||||||||||| Sbjct 142951 CCACCACGGAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 143010 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || |||||||| | ||| || ||||| ||| Sbjct 143011 AGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 143070 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | ||||| || || |||| ||||| Sbjct 143071 ATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTATCAGAAGACTCGAC 143129 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 143130 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 143177 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || || ||||||||||| | Sbjct 143406 ACCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 143465 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||| | ||| |||||||| || Sbjct 143466 GAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGTTGGTCCGGGGG 143525 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || ||| | ||||| ||||| || | || || Sbjct 143526 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 143585 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||| || || |||||||| Sbjct 143586 CTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 143633 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || |||||||||||||| | Sbjct 143178 ACCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 143237 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || || |||| || || ||||| || Sbjct 143238 GAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 143297 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | |||||||| ||||| | ||||| Sbjct 143298 GATACCCTCCTTGTCCTGGATCTTCGACTTAACATTGTCGATAGTATCCGACGACTCGAC 143357 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 143358 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || | Sbjct 143634 ACCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 143693 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| || || ||||| || Sbjct 143694 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 143753 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || || | || || || || || | || || Sbjct 143754 AATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAAC 143813 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 143814 CTCGAGGGTGATGGTCTTGCCGGT 143837 >seq236 Length=225512 Score = 132 bits (146), Expect = 1e-25 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| ||||||||| || ||| ||| |||| ||| | Sbjct 196730 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCT 196671 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||| ||||||||||| |||||| || ||||| ||||| || || ||| || Sbjct 196670 CTTCTCGGTATGAATGCTGACCTCATGAAAACCTACATCGAGTTCGTCGCCGACCGTCTT 196611 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || |||| || ||||| || ||| |||||||||| || |||||| Sbjct 196610 CTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAG 196551 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| ||||| |||| | Sbjct 196550 AACATCTCTCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAG 196491 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 196490 GCTGGTGT 196483 >seq429 Length=129737 Score = 100 bits (110), Expect = 6e-16 Identities = 199/289 (69%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACAA 274490 |||| || || || |||| || | ||| || ||||| | ||||| ||||| | Sbjct 61689 ACGACAGGAGTAATGAATTCTTTGAAGAACCCAGGAATCTTGAGCAGTGAAGGGAACTGA 61630 Query 274491 CTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTG 274548 || || ||||| || | |||||| ||||||| || || || || ||| | Sbjct 61629 ACCTGCAAGAAGTTGATCAAAAGACCCTTGATATGCGAA--CCATCGTGATCCTGATCGG 61572 Query 274549 TCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT-- 274606 ||||||||| | || ||||| ||||||| ||||| |||| |||| | ||| Sbjct 61571 CCATGATCATCAGGTGACCATAACGAAGCGTCTTGGTATCCGTATA-AACTGTCTTGTGC 61513 Query 274607 TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCAC 274666 |||| |||||||| | | |||| | ||||||| |||||| || || ||| Sbjct 61512 TTGAGACCCAAGAACT-GTTTGATATTTTGAATTTCTTGGTTCTTGGTAATTTGGTCCAA 61454 Query 274667 AGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCA 274715 |||||||||||| ||||||| || |||||| || || |||||||||||| Sbjct 61453 AGAAGCATCACGGACGTTCAACATCTTACCACGAAGTGGGAAAACGCCA 61405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733191716992