Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03]
448 sequences; 26,695,738 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq438 150 2e-31
seq419 150 2e-31
seq191 138 1e-27
>seq438
Length=409217
Score = 150 bits (166), Expect = 2e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||||
Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 73368
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 73369 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAAGACTCGAC 73427
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
||||| || || || ||||||||||| ||||| ||||||
Sbjct 73428 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 73467
>seq419
Length=149002
Score = 150 bits (166), Expect = 2e-31
Identities = 161/209 (77%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 41659 ATGCAGCGTG-CTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCT 41717
||| || ||| || ||||||| ||||| ||||| || |||||||| | || || ||||
Sbjct 86386 ATGGAGGGTGACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 86445
Query 41718 GCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTT 41777
||||||| ||||| ||||||||||| ||||||| ||||| || |||||||||| ||| |
Sbjct 86446 GCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 86505
Query 41778 TTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCC 41836
| ||| ||| | | | ||||| ||||| ||||| | || ||||| ||||||
Sbjct 86506 TGGACTT-GACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCC 86564
Query 41837 GTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || ||||| |||||||||||||| ||
Sbjct 86565 GTAAGGGTCTTAACGAAAATCTGCATCTT 86593
>seq191
Length=257482
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || ||| ||||||||| ||||| ||||| |||
Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || |||||||| || ||||| ||||||||||| ||||||| |||
Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||| || |||||| ||
Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTT-AACATTGTCGATAGTATCCGACGACTCGAC 143357
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||||||||||||
Sbjct 143358 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405
Score = 129 bits (142), Expect = 5e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||||||||| |||||||||||||| || | || || |||||||| || || ||
Sbjct 143442 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAA 143501
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|| || ||||||||||||| ||||| || |||||||||| ||| | || | | |||
Sbjct 143502 GATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGT 143560
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | ||||| ||||| ||||| | || || || || || ||||| ||||| |
Sbjct 143561 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 143620
Query 41850 CGAAAATCTGCAT 41862
| || ||||||||
Sbjct 143621 CAAAGATCTGCAT 143633
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||| ||||| || ||||||
Sbjct 143635 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 143694
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||||
Sbjct 143695 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 143754
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 143755 ATACCCTCCTTGTCCTGGATCTT 143777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301411097600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |