Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20bhutanensis_20[genbank_20GCA_5F002018275.1_202017-03-03] 448 sequences; 26,695,738 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq438 150 2e-31 seq419 150 2e-31 seq191 138 1e-27 >seq438 Length=409217 Score = 150 bits (166), Expect = 2e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 73249 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 73308 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| |||| Sbjct 73309 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 73368 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||| ||||| || Sbjct 73369 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAAGACTCGAC 73427 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 ||||| || || || ||||||||||| ||||| |||||| Sbjct 73428 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 73467 >seq419 Length=149002 Score = 150 bits (166), Expect = 2e-31 Identities = 161/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 41659 ATGCAGCGTG-CTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCT 41717 ||| || ||| || ||||||| ||||| ||||| || |||||||| | || || |||| Sbjct 86386 ATGGAGGGTGACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 86445 Query 41718 GCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTT 41777 ||||||| ||||| ||||||||||| ||||||| ||||| || |||||||||| ||| | Sbjct 86446 GCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 86505 Query 41778 TTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCC 41836 | ||| ||| | | | ||||| ||||| ||||| | || ||||| |||||| Sbjct 86506 TGGACTT-GACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCC 86564 Query 41837 GTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| |||||||||||||| || Sbjct 86565 GTAAGGGTCTTAACGAAAATCTGCATCTT 86593 >seq191 Length=257482 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||| ||| Sbjct 143179 CCACCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 143238 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| ||||||||||| ||||||| ||| Sbjct 143239 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 143298 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||| || |||||| || Sbjct 143299 ATACCCTCCTTGTCCTGGATCTTCGACTT-AACATTGTCGATAGTATCCGACGACTCGAC 143357 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 143358 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 143405 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| |||||||||||||| || | || || |||||||| || || || Sbjct 143442 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAA 143501 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||||||||||| ||||| || |||||||||| ||| | || | | ||| Sbjct 143502 GATAAGACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTCGACTTGACGT 143560 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||| | || || || || || ||||| ||||| | Sbjct 143561 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 143620 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 143621 CAAAGATCTGCAT 143633 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || |||||| Sbjct 143635 CCACCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGAG 143694 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| |||| Sbjct 143695 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 143754 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 143755 ATACCCTCCTTGTCCTGGATCTT 143777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301411097600